{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":456584148,"defaultBranch":"main","name":"buisciii-tools","ownerLogin":"BU-ISCIII","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-02-07T16:22:46.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/29040266?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1718712889.0","currentOid":""},"activityList":{"items":[{"before":"11bdaef1f166e603f0d3a88881b83d53cae22329","after":"a7085012331d68ed108454964b1161f9878aa138","ref":"refs/heads/develop","pushedAt":"2024-07-11T11:13:31.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Moved obtain_family function out of the ifstatement, and removed some variables from places where they should not be","shortMessageHtmlLink":"Moved obtain_family function out of the ifstatement, and removed some…"}},{"before":"dc5dc827064d22ac7b3f2a13ddeb2cd55467281d","after":"11bdaef1f166e603f0d3a88881b83d53cae22329","ref":"refs/heads/develop","pushedAt":"2024-07-05T11:25:55.000Z","pushType":"pr_merge","commitsCount":15,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Updated CHANGELOG.md","shortMessageHtmlLink":"Updated CHANGELOG.md"}},{"before":"886981162b84b7a292de5fa0fc0a715698dcef9a","after":"dc5dc827064d22ac7b3f2a13ddeb2cd55467281d","ref":"refs/heads/develop","pushedAt":"2024-07-01T09:05:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"svarona","name":"Sarai Varona","path":"/svarona","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25959991?s=80&v=4"},"commit":{"message":"Fixed error because items can be none, empty list, or list with content","shortMessageHtmlLink":"Fixed error because items can be none, empty list, or list with content"}},{"before":"4d44862110b5c45be2bfafd0a47c84f37ffb1ce2","after":"886981162b84b7a292de5fa0fc0a715698dcef9a","ref":"refs/heads/develop","pushedAt":"2024-06-27T13:18:21.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Updated mag template","shortMessageHtmlLink":"Updated mag template"}},{"before":"4c7c894b9bef145e8386da1537d693784fcebd54","after":"0cbb21d76ae7aac6b58a37678d2247f304038e94","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-27T12:05:41.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Updated mag template","shortMessageHtmlLink":"Updated mag template"}},{"before":"387e4f48c3f3d40559de988f04923f8df25b3e32","after":"4d44862110b5c45be2bfafd0a47c84f37ffb1ce2","ref":"refs/heads/develop","pushedAt":"2024-06-27T12:03:38.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"jaimeozaez","name":null,"path":"/jaimeozaez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/135366362?s=80&v=4"},"commit":{"message":"Modified lablog_characterization_results in order to creating symlinks for tsv files in amrfinderplus analysis","shortMessageHtmlLink":"Modified lablog_characterization_results in order to creating symlink…"}},{"before":"1dffc504b6efda7991afd150ba3dea1cd4b486e1","after":"4c7c894b9bef145e8386da1537d693784fcebd54","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-27T11:36:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Updated mag template","shortMessageHtmlLink":"Updated mag template"}},{"before":"8ff92afcbd3b2a1df9b0f764ebc8d78be857933d","after":"1dffc504b6efda7991afd150ba3dea1cd4b486e1","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-27T11:33:42.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Fixed some routes in a few templates and auxiliar files","shortMessageHtmlLink":"Fixed some routes in a few templates and auxiliar files"}},{"before":"79e996694003272b413de7a102bf249538f6213a","after":"8ff92afcbd3b2a1df9b0f764ebc8d78be857933d","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-27T11:26:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Fixed some routes in a few templates and auxiliar files","shortMessageHtmlLink":"Fixed some routes in a few templates and auxiliar files"}},{"before":"c8497ef5437934d46323f2d13c40cad894f4504e","after":"387e4f48c3f3d40559de988f04923f8df25b3e32","ref":"refs/heads/develop","pushedAt":"2024-06-27T08:49:56.000Z","pushType":"pr_merge","commitsCount":15,"pusher":{"login":"svarona","name":"Sarai Varona","path":"/svarona","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25959991?s=80&v=4"},"commit":{"message":"Fixed black","shortMessageHtmlLink":"Fixed black"}},{"before":"942adad65341e2e3913bfde9556277484b31d5a5","after":"c8497ef5437934d46323f2d13c40cad894f4504e","ref":"refs/heads/develop","pushedAt":"2024-06-26T08:48:16.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Fixed linting mistake","shortMessageHtmlLink":"Fixed linting mistake"}},{"before":"b2644625f24446a1ba03b5f51107ba77ab98d867","after":"79e996694003272b413de7a102bf249538f6213a","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-18T13:56:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Modified some auxiliar viralrecon files","shortMessageHtmlLink":"Modified some auxiliar viralrecon files"}},{"before":"97c08fefa9234ac5be56ef2434d80bde62bb0428","after":"b2644625f24446a1ba03b5f51107ba77ab98d867","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-18T12:36:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Updated CHANGELOG.md","shortMessageHtmlLink":"Updated CHANGELOG.md"}},{"before":"8cb6fcf0661e32dbded44fa22faef68fb594e444","after":"97c08fefa9234ac5be56ef2434d80bde62bb0428","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-18T12:26:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Modified pipelines paths where necessary","shortMessageHtmlLink":"Modified pipelines paths where necessary"}},{"before":"80d0d400a326c213abf670a5ed099f593b836ecc","after":"8cb6fcf0661e32dbded44fa22faef68fb594e444","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-18T12:17:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Modified pipelines paths where necessary","shortMessageHtmlLink":"Modified pipelines paths where necessary"}},{"before":null,"after":"80d0d400a326c213abf670a5ed099f593b836ecc","ref":"refs/heads/pipelines_templates","pushedAt":"2024-06-18T12:14:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Updated plasmidid lablog","shortMessageHtmlLink":"Updated plasmidid lablog"}},{"before":"d1611ccf0d8ca039b0fb2a30f320b5f164e74353","after":"942adad65341e2e3913bfde9556277484b31d5a5","ref":"refs/heads/develop","pushedAt":"2024-06-18T11:20:51.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"victor5lm","name":"Víctor López","path":"/victor5lm","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/98259577?s=80&v=4"},"commit":{"message":"Fixed minor mistake in viralrecon results lablog","shortMessageHtmlLink":"Fixed minor mistake in viralrecon results lablog"}},{"before":"ff90493b8a20c9848280d43553646f83e5253864","after":"d1611ccf0d8ca039b0fb2a30f320b5f164e74353","ref":"refs/heads/develop","pushedAt":"2024-06-14T07:23:37.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"jaimeozaez","name":null,"path":"/jaimeozaez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/135366362?s=80&v=4"},"commit":{"message":"Updated Changelog","shortMessageHtmlLink":"Updated Changelog"}},{"before":"5af33bb192d8f432c610cce778557a6524c60a35","after":"ff90493b8a20c9848280d43553646f83e5253864","ref":"refs/heads/develop","pushedAt":"2024-06-12T14:49:26.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jaimeozaez","name":null,"path":"/jaimeozaez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/135366362?s=80&v=4"},"commit":{"message":"Fixed singularity-images path when updating pangolin database in lablog_viralrecon. (#282)\n\n* Updated CHANGELOG.md\r\n\r\n* removed tatus file\r\n\r\n* Corrected singularity-images path when updating pangolin database\r\n\r\n* Updated Changelog\r\n\r\n* Added line break after prompted input\r\n\r\n* Updated CHANGELOG","shortMessageHtmlLink":"Fixed singularity-images path when updating pangolin database in labl…"}},{"before":"f67600e8f0806409074b3b49376ef3638d7ae940","after":"5af33bb192d8f432c610cce778557a6524c60a35","ref":"refs/heads/develop","pushedAt":"2024-06-10T18:56:45.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jaimeozaez","name":null,"path":"/jaimeozaez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/135366362?s=80&v=4"},"commit":{"message":"Fixed autoclean-sftp function (#281)\n\n* Added @click.pass_context before autoclean_sftp function\r\n\r\n* Updated CHANGELOG.md\r\n\r\n* removed tatus file","shortMessageHtmlLink":"Fixed autoclean-sftp function (#281)"}},{"before":"ba47621fc5aa1774b831655e26f3984a1e7f0fd2","after":"f67600e8f0806409074b3b49376ef3638d7ae940","ref":"refs/heads/develop","pushedAt":"2024-06-07T09:50:34.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"jaimeozaez","name":null,"path":"/jaimeozaez","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/135366362?s=80&v=4"},"commit":{"message":"Fixed clean module (#280)\n\n* services.json modified in order to properly delete fitrimmed fastq les in assembly annotation\r\n\r\n* self.service_samples modified in order to properly get list of service samples\r\n\r\n* assembly files to delete modified in services.json\r\n\r\n* services.json updated with mtbseq service info\r\n\r\n* Modified purge_files function for avoiding repeated files in files_to_delete list\r\n\r\n* Modified purge_files function for avoiding repeated files in files_to_delete list\r\n\r\n* Relocated self.rename() method usage for _DEL renaming of purged folders. Now it is called when self.option = rename_nocopy\r\n\r\n* delete_rename() function renamed to just delete()\r\n\r\n* self.option rename_nocopy renamed to rename\r\n\r\n* Reverted lasts commits\r\n\r\n* Reverted some weird changes...\r\n\r\n* Relocated self.rename() method usage for _DEL renaming of purged folders\r\n\r\n* Renamed self.delete_rename() method. Now is self.delete()\r\n\r\n* rename_nocopy option modified in just rename\r\n\r\n* files to delete added to services.json for rnaseq service\r\n\r\n* Updated CHANGELOG\r\n\r\n* fixed linting\r\n\r\n* Fixed linting","shortMessageHtmlLink":"Fixed clean module (#280)"}},{"before":"b632b0225b5efbe095b4c2f19540e7d023519226","after":"ba47621fc5aa1774b831655e26f3984a1e7f0fd2","ref":"refs/heads/develop","pushedAt":"2024-06-07T09:13:52.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"lintig","shortMessageHtmlLink":"lintig"}},{"before":"cc9aa85dc317e8660ded92cc16f2fe14ac8d981c","after":"b632b0225b5efbe095b4c2f19540e7d023519226","ref":"refs/heads/develop","pushedAt":"2024-06-07T09:09:21.000Z","pushType":"pr_merge","commitsCount":13,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"Test commit without py files","shortMessageHtmlLink":"Test commit without py files"}},{"before":"c9804d5cb79dc458444cc09e24f845084ba5f269","after":"cc9aa85dc317e8660ded92cc16f2fe14ac8d981c","ref":"refs/heads/develop","pushedAt":"2024-06-06T10:18:05.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"svarona","name":"Sarai Varona","path":"/svarona","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25959991?s=80&v=4"},"commit":{"message":"updated CHANGELOG","shortMessageHtmlLink":"updated CHANGELOG"}},{"before":"2db4f87355b5e0116ab3a4b0baab1d1f0b7b487f","after":"c9804d5cb79dc458444cc09e24f845084ba5f269","ref":"refs/heads/develop","pushedAt":"2024-06-06T09:02:22.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"svarona","name":"Sarai Varona","path":"/svarona","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25959991?s=80&v=4"},"commit":{"message":"Updated CHANGELOG.md","shortMessageHtmlLink":"Updated CHANGELOG.md"}},{"before":"810c0837d0bd63a3aca085b4bdf0145db4ac8c67","after":"2db4f87355b5e0116ab3a4b0baab1d1f0b7b487f","ref":"refs/heads/develop","pushedAt":"2024-06-04T12:05:24.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"fixed path for wkhtmltopdf in config dev","shortMessageHtmlLink":"fixed path for wkhtmltopdf in config dev"}},{"before":"cc44b86be97c02b6ee3a684ccd3282464aae6e56","after":"810c0837d0bd63a3aca085b4bdf0145db4ac8c67","ref":"refs/heads/develop","pushedAt":"2024-06-03T13:01:44.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"Included description of columns for annotated tab in exome-trio results markdowns","shortMessageHtmlLink":"Included description of columns for annotated tab in exome-trio resul…"}},{"before":"ffb4e3b2ae12bbbd4aa9eb04a3f96499974a579c","after":"cc44b86be97c02b6ee3a684ccd3282464aae6e56","ref":"refs/heads/develop","pushedAt":"2024-06-03T12:51:09.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"Removed the nodelist option from srun","shortMessageHtmlLink":"Removed the nodelist option from srun"}},{"before":"af0858449a944067625c173d0687f4cd4aeca028","after":"ffb4e3b2ae12bbbd4aa9eb04a3f96499974a579c","ref":"refs/heads/develop","pushedAt":"2024-05-31T22:30:38.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"Minor version fix in github action file","shortMessageHtmlLink":"Minor version fix in github action file"}},{"before":"4344a996573640eef3fd62286f6d09d3d69ce605","after":"af0858449a944067625c173d0687f4cd4aeca028","ref":"refs/heads/develop","pushedAt":"2024-05-31T08:17:40.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"saramonzon","name":"Sara Monzón","path":"/saramonzon","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/3480206?s=80&v=4"},"commit":{"message":"link to PR fixed in changelog","shortMessageHtmlLink":"link to PR fixed in changelog"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEfLx_DAA","startCursor":null,"endCursor":null}},"title":"Activity · BU-ISCIII/buisciii-tools"}