cncd_library

cncd_library is a Python package that contains some handy functions that we use on daily basis at CNCD.

Installation and updating

Use the package manager pip to install cncd_library like below. Rerun this command to check for and install updates .

pip install git+https://github.com/Farrukhbala/cncd_library

Usage

Features:

• functions.checkPhenoCode --> generates a new dataframe containing correction of Phenotype Coding list

Demo of some of the features:

import cncd_library as cncd

data = pd.read_csv(r'file_directory')

#take phenotype coding list from googlesheet
pheno = pd.read_csv(r'phenotype_coding_list.csv')

cncd.checkPhenoCode(data,pheno)