sample.bib

@Article{aiden2009comprehensive,
    Author="Lieberman-Aiden, E.  and van Berkum, N. L.  and Williams, L.  and Imakaev, M.  and Ragoczy, T.  and Telling, A.  and Amit, I.  and Lajoie, B. R.  and Sabo, P. J.  and Dorschner, M. O.  and Sandstrom, R.  and Bernstein, B.  and Bender, M. A.  and Groudine, M.  and Gnirke, A.  and Stamatoyannopoulos, J.  and Mirny, L. A.  and Lander, E. S.  and Dekker, J. ",
    Title="{{C}omprehensive mapping of long-range interactions reveals folding principles of the human genome}",
    Journal="Science",
    Year="2009",
    Volume="326",
    Number="5950",
    Pages="289--293",
    Month="Oct"
}

@Article{fullwood2009oestrogen,
    Author="Fullwood, M. J.  and Liu, M. H.  and Pan, Y. F.  and Liu, J.  and Xu, H.  and Mohamed, Y. B.  and Orlov, Y. L.  and Velkov, S.  and Ho, A.  and Mei, P. H.  and Chew, E. G.  and Huang, P. Y.  and Welboren, W. J.  and Han, Y.  and Ooi, H. S.  and Ariyaratne, P. N.  and Vega, V. B.  and Luo, Y.  and Tan, P. Y.  and Choy, P. Y.  and Wansa, K. D.  and Zhao, B.  and Lim, K. S.  and Leow, S. C.  and Yow, J. S.  and Joseph, R.  and Li, H.  and Desai, K. V.  and Thomsen, J. S.  and Lee, Y. K.  and Karuturi, R. K.  and Herve, T.  and Bourque, G.  and Stunnenberg, H. G.  and Ruan, X.  and Cacheux-Rataboul, V.  and Sung, W. K.  and Liu, E. T.  and Wei, C. L.  and Cheung, E.  and Ruan, Y. ",
    Title="{{A}n oestrogen-receptor-alpha-bound human chromatin interactome}",
    Journal="Nature",
    Year="2009",
    Volume="462",
    Number="7269",
    Pages="58--64",
    Month="Nov"
}

@Article{lun2015diffhic,
    Author="Lun, A. T.  and Smyth, G. K. ",
    Title="{diff{H}ic: a {B}ioconductor package to detect differential genomic interactions in {H}i-{C} data}",
    Journal="BMC Bioinformatics",
    Year="2015",
    Volume="16",
    Pages="258"
}

@Article{harmston2015genomicinteractions,
    Author="Harmston, N.  and Ing-Simmons, E.  and Perry, M.  and Bare\v{s}i\'{c}, A.  and Lenhard, B. ",
    Title="{{G}enomic{I}nteractions: {A}n {R}/{B}ioconductor package for manipulating and investigating chromatin interaction data}",
    Journal="BMC Genomics",
    Year="2015",
    Volume="16",
    Number="1",
    Pages="963"
}

@Article{huber2015orchestrating,
    Author="Huber, W.  and Carey, V. J.  and Gentleman, R.  and Anders, S.  and Carlson, M.  and Carvalho, B. S.  and Bravo, H. C.  and Davis, S.  and Gatto, L.  and Girke, T.  and Gottardo, R.  and Hahne, F.  and Hansen, K. D.  and Irizarry, R. A.  and Lawrence, M.  and Love, M. I.  and MacDonald, J.  and Obenchain, V.  and Oles, A. K.  and Pag\`es, H.  and Reyes, A.  and Shannon, P.  and Smyth, G. K.  and Tenenbaum, D.  and Waldron, L.  and Morgan, M. ",
    Title="{{O}rchestrating high-throughput genomic analysis with {B}ioconductor}",
    Journal="Nat. Methods",
    Year="2015",
    Volume="12",
    Number="2",
    Pages="115--121",
    Month="Feb"
}

@Article{servant2012hitc,
    Author="Servant, N.  and Lajoie, B. R.  and Nora, E. P.  and Giorgetti, L.  and Chen, C. J.  and Heard, E.  and Dekker, J.  and Barillot, E. ",
    Title="{{H}i{T}{C}: exploration of high-throughput '{C}' experiments}",
    Journal="Bioinformatics",
    Year="2012",
    Volume="28",
    Number="21",
    Pages="2843--2844",
    Month="Nov"
}

@Article{simonis2006nuclear,
    Author="Simonis, M.  and Klous, P.  and Splinter, E.  and Moshkin, Y.  and Willemsen, R.  and de Wit, E.  and van Steensel, B.  and de Laat, W. ",
    Title="{{N}uclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4{C})}",
    Journal="Nat. Genet.",
    Year="2006",
    Volume="38",
    Number="11",
    Pages="1348--1354",
    Month="Nov"
}

@Article{lawrence2009rtracklayer,
    Author="Lawrence, M.  and Gentleman, R.  and Carey, V. ",
    Title="{rtracklayer: an {R} package for interfacing with genome browsers}",
    Journal="Bioinformatics",
    Year="2009",
    Volume="25",
    Number="14",
    Pages="1841--1842",
    Month="Jul"
}