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An error #14
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Hi, Can you please share the error log available here: Thanks, |
The merge.log is empty. |
Hmm, do you see a file contains the |
In the file snakejob.mergeAlign.e3999, the message is |
So, I gave the merging these parameters:
As you can see here Princess if the previous configuration is not found it will just adapt what you have. But, from the error, it appears that you do not have enough memory. How much memory CPU available on your node? (You can check also with the IT administrator.) Best, |
Hi Medhat Does the different pypy name cause the calling SNV problem? Best |
Hi, in the installation script. I install the required
The Can you share the error you get? |
The error is Traceback (most recent call last): By the way, I have installed NumPy Python 3.7.4 (default, Aug 13 2019, 20:35:49)
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Hi there
I ran a trial test using the command line as: princess all --directory analysis --ReadType ccs --ref /home/bwu3/Used_V41_P13_107/p107.ens.fasta --jobs 7 --sampleFiles HiFi.fastq.gz --latency-wait 200 -p -c 2 --verbose
An error popped up below
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Error in rule mergeAlign:
jobid: 4
output: /mnt/chsrhome/bwu3/test_file/analysis/align/minimap/data.bam
log: /mnt/chsrhome/bwu3/test_file/analysis/align/minimap/merge.log (check log file(s) for error message)
conda-env: /mnt/chsrhome/bwu3/test_file/analysis/.snakemake/conda/a34f2739af6ede4165125922d923477d_
shell:
Error executing rule mergeAlign on cluster (jobid: 4, external: 3999, jobscript: /mnt/chsrhome/bwu3/test_file/analysis/.snakemake/tmp.a0pkihz4/snakejob.mergeAlign.4.sh). For error details see the cluster log and the log files of the involved rule(s).
########
Could you please give me some suggestions? Thanks
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