Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Refactor variant calling processes to use separate normalize_vcf steps #32

Open
stevekm opened this issue Aug 28, 2019 · 0 comments
Open

Refactor variant calling processes to use separate normalize_vcf steps #32

stevekm opened this issue Aug 28, 2019 · 0 comments
Labels
enhancement New feature or request

Comments

@stevekm
Copy link
Member

stevekm commented Aug 28, 2019

Right now most variant calling processes in the pipeline immediately normalize vcf files internally with bcftools using their own dedicated methods. Need to decouple these into the separate normalize_vcfs_pairs and normalize_vcfs tasks.
@stevekm stevekm added the enhancement New feature or request label Sep 5, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@stevekm