Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Convert 'Demultiplex_Stats.htm' to .csv #2

Open
stevekm opened this issue Jul 13, 2018 · 2 comments
Open

Convert 'Demultiplex_Stats.htm' to .csv #2

stevekm opened this issue Jul 13, 2018 · 2 comments
Assignees
@stevekm
Labels
enhancement New feature or request

Comments

@stevekm
Copy link
Member

stevekm commented Jul 13, 2018

Need to convert the Demultiplex_Stats.htm table output by bcl2fastq to one or more .csv formatted tables for easier usage and importing elsewhere.
@stevekm stevekm self-assigned this Jul 13, 2018
@stevekm stevekm added the enhancement New feature or request label Jul 13, 2018
@stevekm
Copy link
Member Author

stevekm commented Oct 18, 2019

I made a script for this, need to get it added to the repo and pipeline. Really, can just offload all the .htm file processing to a dedicated R script and run it separately before running the reporting step.

@stevekm
Copy link
Member Author

stevekm commented Oct 18, 2019

should include aggregation scripts to collapse lane metrics

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@stevekm stevekm

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@stevekm