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How to import roary pangenome results into panphlan? #38

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yihandqx opened this issue Jan 6, 2023 · 0 comments
Open

How to import roary pangenome results into panphlan? #38

yihandqx opened this issue Jan 6, 2023 · 0 comments

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@yihandqx
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yihandqx commented Jan 6, 2023

Hi, thanks for providing us with the tool for phylogenomic analysis.
I am trying to use panphlan to do strain-level analysis on a species which here has more than 2,000 genomes (including metagenomic assembly genomes). Since the step of generating pangenome database takes a lot of time and the species has been analylized with roary for pangenome, is there any way to import the roary pangenome results into panphlan? Thanks!

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