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panphlan_clean_pangenome.py isn't installed as part of the package #39

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sterrettJD opened this issue Apr 10, 2023 · 0 comments
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@sterrettJD
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Hi PanPhlAn team,

I was going to use panphlan_clean_pangenome.py with to clean a pangenome that I downloaded with PanPhlAn v3.1 and am using for mapping. However, through the conda installed package, panphlan_clean_pangenome.py isn't installed as part of the package (ie, I can't access it by calling panphlan_clean_pangenome.py -h, like I could with panphlan_map.py -h).

I've copied the script to my working directory, but I was wondering if (for future use) it would be possible to add panphlan_clean_pangenome.py to setup.py so it can be accessed without copying to the working directory or providing a full path?

Thanks!
John

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