diff --git a/terms/Pfam.sh b/terms/Pfam.sh index c03b50a..13b25d7 100644 --- a/terms/Pfam.sh +++ b/terms/Pfam.sh @@ -1,7 +1,6 @@ -wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/database_files/pfamA.txt.gz +wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/pfamA.txt.gz gunzip pfamA.txt.gz -cat pfamA.txt | awk -F"\t" '{print "Pfam\t"$1"\t"$4}' > Pfam.terms.txt +cat pfamA.txt | awk -F"\t" '{print "Pfam\t"$2"\t"$5}' > Pfam.terms.txt wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/database_files/dead_family.txt.gz gunzip dead_family.txt.gz cat dead_family.txt | awk -F"\t" '{print "Pfam\t"$1"\t"$2" (deprecated): "$3}' > Pfam.deprecated-terms.txt -