From 4fc0908d64bf45dc5eb04c695a9cfc7294b6a37e Mon Sep 17 00:00:00 2001 From: Stephen Ficklin Date: Thu, 16 May 2019 08:43:41 -0700 Subject: [PATCH] Update Pfam.sh --- terms/Pfam.sh | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/terms/Pfam.sh b/terms/Pfam.sh index c03b50a..13b25d7 100644 --- a/terms/Pfam.sh +++ b/terms/Pfam.sh @@ -1,7 +1,6 @@ -wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/database_files/pfamA.txt.gz +wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/pfamA.txt.gz gunzip pfamA.txt.gz -cat pfamA.txt | awk -F"\t" '{print "Pfam\t"$1"\t"$4}' > Pfam.terms.txt +cat pfamA.txt | awk -F"\t" '{print "Pfam\t"$2"\t"$5}' > Pfam.terms.txt wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/database_files/dead_family.txt.gz gunzip dead_family.txt.gz cat dead_family.txt | awk -F"\t" '{print "Pfam\t"$1"\t"$2" (deprecated): "$3}' > Pfam.deprecated-terms.txt -