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setup.py
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setup.py
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#!/usr/bin/env python
import setuptools
# TODO requirements
setuptools.setup(
name='trxtools',
version='0.2.2',
author="Tomasz W. Turowski, Jan Mikołajczyk",
author_email="[email protected]",
description='Python tools facilitating bioinformatic analysis of nascent transcripts and transcriptomic data.',
long_description=open('README.md').read(),
license='LICENSE.txt',
keywords="bioinformatics RNA RNAfolding transcription BigWig",
packages=setuptools.find_packages(),
classifiers=[
'Development Status :: 3 - Alpha',
'Environment :: Console',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Apache Software License',
'Operating System :: OS Independent',
'Programming Language :: Python :: 3',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Visualization',
'Topic :: Software Development :: Libraries :: Python Modules'],
scripts=['scripts/SAM2profiles.py',
'scripts/SAM2profilesGenomic.py',
'scripts/mergeSalmon.py',
'scripts/csv2pickle.py',
'scripts/genome2WindowsGTF.py'],
install_requires=[
'scikit-learn','pandas', 'numpy', 'pybedtools',
'pyBigWig', 'adjustText', 'scipy', 'matplotlib_venn',
'seaborn', 'matplotlib', 'requests'],
python_requires='>=3.6'
)