issue with tidytree 0.3.9 -> 0.4.0 under latest R 4.2.1-2

[splaisan]

Dear,

I just tried to install other packages depending on tidytree and they failed.
Installing tidytree itself also fails after looking for a missing class.

I recently had other packages failing in that way, it seems that some general functions of classes have vanished with some recent R upgrade.

Does any one know what to do here?

Thanks in advance

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23) ubuntu 20 (up-to-date)

> BiocManager::install("tidytree")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cloud.r-project.org

Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Installing package(s) 'tidytree'
trying URL 'https://cloud.r-project.org/src/contrib/tidytree_0.4.0.tar.gz'
Content type 'application/x-gzip' length 63761 bytes (62 KB)
==================================================
downloaded 62 KB

* installing *source* package ‘tidytree’ ...
** package ‘tidytree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in setClassUnion("DNAbin_Or_AAbin", c("DNAbin", "AAbin", "NULL")) : 
  could not find function "setClassUnion"
Error: unable to load R code in package ‘tidytree’
Execution halted
ERROR: lazy loading failed for package ‘tidytree’
* removing ‘/opt/R_LIBS/tidytree’
* restoring previous ‘/opt/R_LIBS/tidytree’

The downloaded source packages are in
	‘/opt/R_LIBS/tmp/RtmpapGmC3/downloaded_packages’
Old packages: 'tidytree'
Update all/some/none? [a/s/n]: 
a
trying URL 'https://cloud.r-project.org/src/contrib/tidytree_0.4.0.tar.gz'
Content type 'application/x-gzip' length 63761 bytes (62 KB)
==================================================
downloaded 62 KB

* installing *source* package ‘tidytree’ ...
** package ‘tidytree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in setClassUnion("DNAbin_Or_AAbin", c("DNAbin", "AAbin", "NULL")) : 
  could not find function "setClassUnion"
Error: unable to load R code in package ‘tidytree’
Execution halted
ERROR: lazy loading failed for package ‘tidytree’
* removing ‘/opt/R_LIBS/tidytree’
* restoring previous ‘/opt/R_LIBS/tidytree’

The downloaded source packages are in
	‘/opt/R_LIBS/tmp/RtmpapGmC3/downloaded_packages’
Warning messages:
1: In install.packages(...) :
  installation of package ‘tidytree’ had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :
  installation of package ‘tidytree’ had non-zero exit status

Not a BioConductor issue, I get the same with the R installer

> install.packages("tidytree")
trying URL 'https://cloud.r-project.org/src/contrib/tidytree_0.4.0.tar.gz'
Content type 'application/x-gzip' length 63761 bytes (62 KB)
==================================================
downloaded 62 KB

* installing *source* package ‘tidytree’ ...
** package ‘tidytree’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in setClassUnion("DNAbin_Or_AAbin", c("DNAbin", "AAbin", "NULL")) : 
  could not find function "setClassUnion"
Error: unable to load R code in package ‘tidytree’
Execution halted
ERROR: lazy loading failed for package ‘tidytree’
* removing ‘/opt/R_LIBS/tidytree’
* restoring previous ‘/opt/R_LIBS/tidytree’
Warning in install.packages :
  installation of package ‘tidytree’ had non-zero exit status

The downloaded source packages are in
	‘/opt/R_LIBS/tmp/RtmpRfy7nt/downloaded_packages’