README.md

R and Matlab code I wrote for companion diagnostics, UriWatch - LiquidThermometer

Matlab code I wrote to segregate lung cancer stage IV drug-naive patients in Rotterdam and Enschede, NL (provided by Johan de Rooij, PhD) from healthy urinary microRNA samples (the divergence implementation is by Tsachy Weissman lab)

R code I wrote for disease biomarker multivariate data analysis (the principal component analysis is by FactoMineR, there is also a function for differential expression analysis and heatmaps from the Thomas Tuschl lab, an additional function for differential expression analysis, support vector machine and random forest classification is by Karin Groothuis-Oudshoorn, PhD) of urinary microRNA

An IRB protocol and information on building a biobank as well as sample collection and storage are available here: http://www.uriwatch.com (8 PDF files)

Presentations and a funding application on this project are available here: http://dx.doi.org/10.13140/RG.2.2.22338.56007/1 (8 PDF files)