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setup.py
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setup.py
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import setuptools
from io import open
import os
version_module = {}
dirname = os.path.dirname(__file__)
with open(os.path.join(dirname, "src/pasio/version.py")) as fp:
exec(fp.read(), version_module)
__version__ = version_module['__version__']
with open(os.path.join(dirname, "README.md"), encoding='utf8') as fh:
long_description = fh.read()
setuptools.setup(
name="pasio", # Replace with your own username
version=__version__,
author="Andrey Lando, Ilya Vorontsov",
author_email="[email protected], [email protected]",
description="Pasio is a tool for segmentation and denosing DNA coverage profiles coming from high-throughput sequencing data.",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/autosome-ru/pasio",
license="Pasio is licensed under WTFPL, but if you prefer more standard licenses, feel free to treat it as MIT license",
packages=setuptools.find_packages('src'),
package_dir={'': 'src'},
include_package_data=True,
keywords='bioinformatics NGS coverage segmentation denoise',
classifiers=[
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Development Status :: 5 - Production/Stable",
"Operating System :: OS Independent",
'Programming Language :: Python :: 2',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: 3.7',
'Programming Language :: Python :: 3.8',
],
python_requires='>=2.7.1, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*',
install_requires=['numpy >= 1.8.0', 'scipy>=0.12.0', 'future >= 0.4.0',],
extras_require={
'dev': ['pytest', 'pytest-benchmark', 'flake8', 'tox', 'wheel', 'twine', 'setuptools_scm'],
},
entry_points={
'console_scripts': [
'pasio=pasio.cli:main',
],
},
use_scm_version=False,
setup_requires=['setuptools_scm'],
)