Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

errors when running kb count #22

Open
Sunyp-IM opened this issue May 13, 2023 · 0 comments
Open

errors when running kb count #22

Sunyp-IM opened this issue May 13, 2023 · 0 comments

Comments

@Sunyp-IM
Copy link

Dear All,

I am trying to follow the tutor. When I run
kb count -i transcriptome.idx -g t2g.txt -x 10xv2 --workflow lamanno --loom -c1 cdna_t2c.txt -c2 intron_t2c.txt read_1.fastq.gz read_2.fastq.gz

I get the errors:

Error: kallisto index file not found transcriptome.idx
Error: file not found read_1.fastq.gz
Error: file not found read_2.fastq.gz
[2023-05-13 03:04:36,697]   ERROR [main] An exception occurred

Could you tell me how to get these idx, read_1.fastq.gz, and read_2.fastq.gz files?

Thank you in Advance.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant