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  1. bacnet bacnet Public

    BACNET is a Java based platform to develop website for multi-omics analysis

    Java 13 1

  2. MeRIPSeq MeRIPSeq Public

    MeRIP-Seq pipeline analysis for m6a methylation site detection

    Python 6

  3. checkatlas checkatlas Public

    One liner tool to check the quality of your single-cell atlases.

    HTML 3 1

  4. ListeriomicsSample ListeriomicsSample Public

    Sample dataset used for starting up BACNET demo

    Shell 1

  5. RIPSeq-Listeria RIPSeq-Listeria Public

    RIP-Seq and RNA-Seq of an RNA-binding protein secreted by Listeria monocytogenes which activates RIG-I signaling Secreted bacterial

    R 1 2

  6. cellranger-to-scanpy cellranger-to-scanpy Public

    A small python script to import cellranger analysis into Scapy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalize…

    Python 1

Repositories

Showing 10 of 20 repositories
  • checkatlas Public

    One liner tool to check the quality of your single-cell atlases.

    becavin-lab/checkatlas’s past year of commit activity
    HTML 3 BSD-3-Clause 1 16 (1 issue needs help) 0 Updated Apr 10, 2024
  • nf-omicstd Public

    Nextflow for rnaseq workflow

    becavin-lab/nf-omicstd’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 24, 2023
  • nf-blast Public

    Nextflow - Blast workflow

    becavin-lab/nf-blast’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 20, 2023
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    becavin-lab/MultiQC’s past year of commit activity
    Python 0 GPL-3.0 592 0 0 Updated Jul 25, 2023
  • nf-core-checkatlas Public

    One liner tool to check the quality of your single-cell atlases.

    becavin-lab/nf-core-checkatlas’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Jul 25, 2023
  • MultiQC_TestData Public Forked from MultiQC/test-data

    Test data for MultiQC. See https://github.com/ewels/MultiQC

    becavin-lab/MultiQC_TestData’s past year of commit activity
    HTML 0 MIT 138 0 0 Updated Jul 21, 2023
  • scCellMarkers Public

    Website for screening marker genes to lung cell type hierarchical graph

    becavin-lab/scCellMarkers’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jun 12, 2023
  • BioRegul Public
    becavin-lab/BioRegul’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Jun 6, 2023
  • bacnet Public

    BACNET is a Java based platform to develop website for multi-omics analysis

    becavin-lab/bacnet’s past year of commit activity
    Java 13 GPL-3.0 1 24 (3 issues need help) 0 Updated Feb 21, 2023
  • cellranger-to-scanpy Public

    A small python script to import cellranger analysis into Scapy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalized RNA count matrix.

    becavin-lab/cellranger-to-scanpy’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jul 27, 2022
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