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Stuck at Kmer array filtered to 31 elements #57

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gargkritika opened this issue Aug 14, 2022 · 0 comments
Open

Stuck at Kmer array filtered to 31 elements #57

gargkritika opened this issue Aug 14, 2022 · 0 comments

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@gargkritika
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Hi
I am trying Satsuma2 to filter out scaffolds mapping to the sex chromosomes. My run is stuck at Kmer array filtered to 31 elements for a week now. Can you please suggest a solution for this error.
The command I used was

./SatsumaSynteny2 -q /DATA1/balaji/3_repeat_masking/output.fasta.masked -t /DATA1/balaji/5_psmc/sex_chr_rm/sex_chromosome.txt -o /DATA1/balaji/6_satsuma/results -threads 16

Thank you
Best regards
Kritika
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@gargkritika