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Will not change min_prob #60

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tamsinlh opened this issue Jun 23, 2023 · 0 comments
Open

Will not change min_prob #60

tamsinlh opened this issue Jun 23, 2023 · 0 comments

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@tamsinlh
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Good afternoon.

I cannot seem to get Satsuma to provide an output with a lower minimum probability. I need it to be at 75%, not 99.9%.
I am providing the following line:
SatsumaSynteny2 -q ./Anchored.scaffolds.only.fa -t ./GCF_002234675.1_ASM223467v1_genomic.fa -o GS_Satsuma2_WholeGenome_200match075prob -l 200 -min_prob 0.75

I have also tried with -min_prob 75 as the README seems to indicate it should be but I still receive the same output where everything is 1.0000

Please advise.

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