{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":390184331,"defaultBranch":"master","name":"Qmatey","ownerLogin":"bodeolukolu","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-07-28T02:17:13.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/53925092?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1646197272.8889952","currentOid":""},"activityList":{"items":[{"before":"7d89da3cd7d7484dce43acd0ca4bcd6057b4cccb","after":"0b96d32918f9e6f9cc046865459d712787c1f7f6","ref":"refs/heads/master","pushedAt":"2024-05-15T02:35:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix bug: master ref","shortMessageHtmlLink":"fix bug: master ref"}},{"before":"8856b2f2def24a19753ba9f04bb638e6485c8ec2","after":"7d89da3cd7d7484dce43acd0ca4bcd6057b4cccb","ref":"refs/heads/master","pushedAt":"2024-05-14T01:04:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"check R-package before each run","shortMessageHtmlLink":"check R-package before each run"}},{"before":"88edb8e441758988571c3d43f583d66052223ed4","after":"8856b2f2def24a19753ba9f04bb638e6485c8ec2","ref":"refs/heads/master","pushedAt":"2024-04-09T19:27:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update taxids list","shortMessageHtmlLink":"update taxids list"}},{"before":"6d5e3422cda0df4883b4a11e316bc86255ab8af7","after":"88edb8e441758988571c3d43f583d66052223ed4","ref":"refs/heads/master","pushedAt":"2024-02-07T09:41:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"allow usage of system-installed samtools","shortMessageHtmlLink":"allow usage of system-installed samtools"}},{"before":"00293ca1e7c7c1bb256a4e7da39e5cf49f4d2db6","after":"6d5e3422cda0df4883b4a11e316bc86255ab8af7","ref":"refs/heads/master","pushedAt":"2024-01-27T07:53:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"view pipeline help","shortMessageHtmlLink":"view pipeline help"}},{"before":"b9c5bc3413e457ea6b7775362e42f65da4485bef","after":"00293ca1e7c7c1bb256a4e7da39e5cf49f4d2db6","ref":"refs/heads/master","pushedAt":"2024-01-27T07:30:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"view pipeline help","shortMessageHtmlLink":"view pipeline help"}},{"before":"2b51a0a0fcc0d297a9e1d9783205659bf32104d0","after":"b9c5bc3413e457ea6b7775362e42f65da4485bef","ref":"refs/heads/master","pushedAt":"2024-01-26T08:16:58.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"view pipeline help","shortMessageHtmlLink":"view pipeline help"}},{"before":"861b9b84a77f7b692d5690d0dadcc1e25c151266","after":"2b51a0a0fcc0d297a9e1d9783205659bf32104d0","ref":"refs/heads/master","pushedAt":"2024-01-08T06:17:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"avoid warning: creates empty files when required","shortMessageHtmlLink":"avoid warning: creates empty files when required"}},{"before":"6c913fec1801d560c9b49e7698b7f5dba5ec3a39","after":"861b9b84a77f7b692d5690d0dadcc1e25c151266","ref":"refs/heads/master","pushedAt":"2024-01-04T00:49:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update config.sh file","shortMessageHtmlLink":"update config.sh file"}},{"before":"7ac59699c16008a59cd17dc94bd9a9d3eb0a720b","after":"6c913fec1801d560c9b49e7698b7f5dba5ec3a39","ref":"refs/heads/master","pushedAt":"2024-01-01T06:40:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"accepts multiple nucl databases for megablast","shortMessageHtmlLink":"accepts multiple nucl databases for megablast"}},{"before":"00468d01ab92e66856f3d14463eb680d70adc934","after":"7ac59699c16008a59cd17dc94bd9a9d3eb0a720b","ref":"refs/heads/master","pushedAt":"2023-12-18T12:03:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"trim homopolymers","shortMessageHtmlLink":"trim homopolymers"}},{"before":"e35a1fc36b3cb20086e8fd45ae09591c2f5d4e7c","after":"00468d01ab92e66856f3d14463eb680d70adc934","ref":"refs/heads/master","pushedAt":"2023-12-16T06:40:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update manual. To skip burn-in, set burn-in=0","shortMessageHtmlLink":"update manual. To skip burn-in, set burn-in=0"}},{"before":"47c390b7e5743102323291e8ea024fd66977dcf8","after":"e35a1fc36b3cb20086e8fd45ae09591c2f5d4e7c","ref":"refs/heads/master","pushedAt":"2023-12-03T11:29:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update for single sample variant profiling","shortMessageHtmlLink":"update for single sample variant profiling"}},{"before":"2e82a268febbbfcfa6e7119f035bf53d9cb7acad","after":"47c390b7e5743102323291e8ea024fd66977dcf8","ref":"refs/heads/master","pushedAt":"2023-10-19T16:13:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix when samples return zero host-aligned reads","shortMessageHtmlLink":"fix when samples return zero host-aligned reads"}},{"before":"3aab42c5d9e73bd9ecea1881d25c2132b5b9ecb0","after":"2e82a268febbbfcfa6e7119f035bf53d9cb7acad","ref":"refs/heads/master","pushedAt":"2023-09-29T18:43:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"improved speed with burn-in run","shortMessageHtmlLink":"improved speed with burn-in run"}},{"before":"cee2a4b17476a40a2cada9bf03bb187e329433f6","after":"3aab42c5d9e73bd9ecea1881d25c2132b5b9ecb0","ref":"refs/heads/master","pushedAt":"2023-08-31T00:57:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"options for Spearman and CCLasso correlations","shortMessageHtmlLink":"options for Spearman and CCLasso correlations"}},{"before":"136ab8e19fd8f6e731736e4c9fe6977b1c66dc1e","after":"cee2a4b17476a40a2cada9bf03bb187e329433f6","ref":"refs/heads/master","pushedAt":"2023-08-28T12:16:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"set default max_target from 100000 to 10000","shortMessageHtmlLink":"set default max_target from 100000 to 10000"}},{"before":"e97ca325b3dfda2e960fdcf0b35817a35aad26c9","after":"136ab8e19fd8f6e731736e4c9fe6977b1c66dc1e","ref":"refs/heads/master","pushedAt":"2023-08-23T21:09:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"updated burn-in parameters","shortMessageHtmlLink":"updated burn-in parameters"}},{"before":"6fb0744ea243b053e5dd823611d1c9bf8a34c163","after":"e97ca325b3dfda2e960fdcf0b35817a35aad26c9","ref":"refs/heads/master","pushedAt":"2023-08-21T15:23:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"burn-in set to zero by default","shortMessageHtmlLink":"burn-in set to zero by default"}},{"before":"69038b94b3e57d4b2a32603d1c2f4e1b38a516ff","after":"6fb0744ea243b053e5dd823611d1c9bf8a34c163","ref":"refs/heads/master","pushedAt":"2023-08-17T18:00:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"burn-in step to increase speed (database reduction)","shortMessageHtmlLink":"burn-in step to increase speed (database reduction)"}},{"before":"2cc82eeef10e09540e34eeaa73779d22351e7a71","after":"69038b94b3e57d4b2a32603d1c2f4e1b38a516ff","ref":"refs/heads/master","pushedAt":"2023-08-11T15:13:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix bug for no_normalization with spike/host reference","shortMessageHtmlLink":"fix bug for no_normalization with spike/host reference"}},{"before":"6c7c717745d06e02da61fea62e71d761e180f6da","after":"2cc82eeef10e09540e34eeaa73779d22351e7a71","ref":"refs/heads/master","pushedAt":"2023-08-02T20:31:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"parameter setting to comsume query length","shortMessageHtmlLink":"parameter setting to comsume query length"}},{"before":"91b67644cf536a8829f2ac5f6680afbab1b93833","after":"6c7c717745d06e02da61fea62e71d761e180f6da","ref":"refs/heads/master","pushedAt":"2023-07-29T15:13:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix syntax error for sunburst visualizations","shortMessageHtmlLink":"fix syntax error for sunburst visualizations"}},{"before":"9f0e9406203cad6c3cc45968c3519974c2958cae","after":"91b67644cf536a8829f2ac5f6680afbab1b93833","ref":"refs/heads/master","pushedAt":"2023-07-29T15:11:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix syntax error for sunburst visualizations","shortMessageHtmlLink":"fix syntax error for sunburst visualizations"}},{"before":"220928b57925cf9e5c31a7f048e83f22a272da72","after":"9f0e9406203cad6c3cc45968c3519974c2958cae","ref":"refs/heads/master","pushedAt":"2023-07-27T18:01:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"check bam before deleting compressed files_v3","shortMessageHtmlLink":"check bam before deleting compressed files_v3"}},{"before":"0a669c6c22ec109fba10771fa7f01b0cf31e2a9f","after":"220928b57925cf9e5c31a7f048e83f22a272da72","ref":"refs/heads/master","pushedAt":"2023-07-26T02:31:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"check bam before deleting compressed files_v2","shortMessageHtmlLink":"check bam before deleting compressed files_v2"}},{"before":"eb9e632e6137c7a091f05c55e792a9e1a3e9bca9","after":"0a669c6c22ec109fba10771fa7f01b0cf31e2a9f","ref":"refs/heads/master","pushedAt":"2023-07-26T02:09:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"check bam before deleting compressed files","shortMessageHtmlLink":"check bam before deleting compressed files"}},{"before":"1696baaa171ef2a758618410a4a198ef7ad775e7","after":"eb9e632e6137c7a091f05c55e792a9e1a3e9bca9","ref":"refs/heads/master","pushedAt":"2023-07-12T16:03:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"ref genome formatting","shortMessageHtmlLink":"ref genome formatting"}},{"before":"600a58607b7592952fbdeb94ac8370964901566c","after":"1696baaa171ef2a758618410a4a198ef7ad775e7","ref":"refs/heads/master","pushedAt":"2023-07-03T04:38:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"update handling of reference genome with may scaffolds/contigs","shortMessageHtmlLink":"update handling of reference genome with may scaffolds/contigs"}},{"before":"d4c2ab85c2f60675575631e678b170e733ff54fb","after":"600a58607b7592952fbdeb94ac8370964901566c","ref":"refs/heads/master","pushedAt":"2023-06-26T15:12:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bodeolukolu","name":"Bode Olukolu","path":"/bodeolukolu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53925092?s=80&v=4"},"commit":{"message":"fix syntax for sample ids ending in numbers","shortMessageHtmlLink":"fix syntax for sample ids ending in numbers"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEShJ5jAA","startCursor":null,"endCursor":null}},"title":"Activity ยท bodeolukolu/Qmatey"}