simulate_data.ipynb

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   "source": [
    "# Visualize simulated data"
   ]
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      "The autoreload extension is already loaded. To reload it, use:\n",
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       "<script>requirejs.config({paths: { 'plotly': ['https://cdn.plot.ly/plotly-latest.min']},});if(!window.Plotly) {{require(['plotly'],function(plotly) {window.Plotly=plotly;});}}</script>"
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   "source": [
    "import os\n",
    "import plotly\n",
    "#from plotly.offline import download_plotlyjs, init_notebook_mode, plot, iplot\n",
    "import plotly.offline as py \n",
    "py.init_notebook_mode(connected=True)\n",
    "import plotly.graph_objs as go\n",
    "\n",
    "import numpy as np\n",
    "import matplotlib.pyplot as plt\n",
    "\n",
    "from surv_maker import SurvMaker"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
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   "source": [
    "smaker = SurvMaker()\n",
    "\n",
    "N = 5000\n",
    "\n",
    "linear_risk = smaker.generate_samples(\n",
    "    num_smpl=N, num_covs=5, num_fact=2, \n",
    "    mean_surv_time=300, max_observ_period=1000, \n",
    "    censor_rate=0.1, method='linear')\n",
    "\n",
    "gaussian_risk = smaker.generate_samples(\n",
    "    num_smpl=N, num_covs=5, num_fact=2, \n",
    "    mean_surv_time=300, max_observ_period=1000, \n",
    "    censor_rate=0.1, method='gaussian')\n",
    "\n",
    "#smaker.pickle_data(linear_risk, 'linear_risk1')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "collapsed": false
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   "outputs": [
    {
     "name": "stdout",
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     "text": [
      "Saved to: /Users/bychkov/GDD/Projects/simu/simulated_data/linear_5K.csv\n",
      "Saved to: /Users/bychkov/GDD/Projects/simu/simulated_data/linear_5K.pkl\n"
     ]
    }
   ],
   "source": [
    "lin_name = 'linear_5K'\n",
    "smaker.export_to_csv(linear_risk, lin_name)\n",
    "smaker.export_to_pkl(linear_risk, lin_name)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": false
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   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Saved to: /Users/bychkov/GDD/Projects/simu/simulated_data/gaussian_5K.csv\n",
      "Saved to: /Users/bychkov/GDD/Projects/simu/simulated_data/gaussian_5K.pkl\n"
     ]
    }
   ],
   "source": [
    "gaus_name = 'gaussian_5K'\n",
    "smaker.export_to_csv(gaussian_risk, gaus_name)\n",
    "smaker.export_to_pkl(gaussian_risk, gaus_name)"
   ]
  },
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   "cell_type": "code",
   "execution_count": null,
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