{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":261539486,"defaultBranch":"master","name":"pangolin","ownerLogin":"cbg-ethz","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-05-05T17:29:19.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/12068026?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1712857954.0","currentOid":""},"activityList":{"items":[{"before":"ec71ec7e23481b2afc990c9ffd12a943035aefd2","after":"cc00e81040df811b078beeb448a3083dd7ccce4b","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-07-10T17:03:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] fix conditional stopping uploads for empty submissions","shortMessageHtmlLink":"[FIX] fix conditional stopping uploads for empty submissions"}},{"before":"95c7ab80269f83667e9279b1d3b31ac33e495c1a","after":"ec71ec7e23481b2afc990c9ffd12a943035aefd2","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-07-10T15:36:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] fix ftp/https switch","shortMessageHtmlLink":"[FIX] fix ftp/https switch"}},{"before":"2212780ae6953f57cd20e305e4ccd1d7c345b140","after":"95c7ab80269f83667e9279b1d3b31ac33e495c1a","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-07-10T15:26:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] https/ftp download fix","shortMessageHtmlLink":"[FIX] https/ftp download fix"}},{"before":"f6be5a4d9ad4f0e77537763d3409911be43d2d42","after":"2212780ae6953f57cd20e305e4ccd1d7c345b140","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-07-08T17:27:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FEAT] branching automation for Aviti sequencing","shortMessageHtmlLink":"[FEAT] branching automation for Aviti sequencing"}},{"before":"ea79adcf53e7b4206ebf0ac4de2e762d4ea8eb7b","after":"f6be5a4d9ad4f0e77537763d3409911be43d2d42","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-07-03T16:29:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] aviti sequencing","shortMessageHtmlLink":"[FIX] aviti sequencing"}},{"before":"7468f523cd392f75f1cbef069fd04d5775d6a92a","after":"ea79adcf53e7b4206ebf0ac4de2e762d4ea8eb7b","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-07-03T16:26:36.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FEAT] sortsamples for Aviti sequencing","shortMessageHtmlLink":"[FEAT] sortsamples for Aviti sequencing"}},{"before":"c29169a2cbede3ee108b2fd1fa741c6a00d2c1ac","after":"7468f523cd392f75f1cbef069fd04d5775d6a92a","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-05-23T15:49:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FEAT] added blacklist for uploader","shortMessageHtmlLink":"[FEAT] added blacklist for uploader"}},{"before":"14acf7188bd3398cc1b58ff69e5e12c8552f40f1","after":"c29169a2cbede3ee108b2fd1fa741c6a00d2c1ac","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-05-14T14:08:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] fixed uploader switch","shortMessageHtmlLink":"[FIX] fixed uploader switch"}},{"before":"68c7cfc46b7169c3d721d91904f331ee12abdb10","after":"14acf7188bd3398cc1b58ff69e5e12c8552f40f1","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-05-14T12:30:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] fixing FGCZ filename changes","shortMessageHtmlLink":"[FIX] fixing FGCZ filename changes"}},{"before":"9c2f66c3389b4bf5861c71b73027d06898fa0a58","after":"68c7cfc46b7169c3d721d91904f331ee12abdb10","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-05-14T12:07:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] adapt to new FGCZ filenames","shortMessageHtmlLink":"[FIX] adapt to new FGCZ filenames"}},{"before":"936f15b5647883eb3ceb603649c803bc7216525b","after":"9c2f66c3389b4bf5861c71b73027d06898fa0a58","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-05-14T11:53:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[FIX] adapt to new FGCZ filename conventions","shortMessageHtmlLink":"[FIX] adapt to new FGCZ filename conventions"}},{"before":"efe859076c91f5a04e1beaa47e1ffe635f491412","after":"29f17feabe24d189953a4d0f0456d80afc227877","ref":"refs/heads/biofilm_processing","pushedAt":"2024-05-13T16:52:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"[WIP] setup","shortMessageHtmlLink":"[WIP] setup"}},{"before":"efc7d2b1d84e0da678acc5ab3057a95d6d182cb4","after":"936f15b5647883eb3ceb603649c803bc7216525b","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-05-13T11:31:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"update settings","shortMessageHtmlLink":"update settings"}},{"before":"9572e054fd14f33f18fa6fab1a2df783c846430c","after":"efc7d2b1d84e0da678acc5ab3057a95d6d182cb4","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-04-15T16:48:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"add full year processing commands","shortMessageHtmlLink":"add full year processing commands"}},{"before":"98db05a98b6a2d588f4e4aed41f6cebcf0aa8c88","after":"efe859076c91f5a04e1beaa47e1ffe635f491412","ref":"refs/heads/biofilm_processing","pushedAt":"2024-04-11T18:03:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"setup","shortMessageHtmlLink":"setup"}},{"before":null,"after":"98db05a98b6a2d588f4e4aed41f6cebcf0aa8c88","ref":"refs/heads/biofilm_processing","pushedAt":"2024-04-11T17:52:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"setup","shortMessageHtmlLink":"setup"}},{"before":"6cb83cfaa4f8233cc49c80a974ba92c214c94024","after":"9572e054fd14f33f18fa6fab1a2df783c846430c","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-04-08T10:02:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"update configuration","shortMessageHtmlLink":"update configuration"}},{"before":"661de702221d941c640900d6eb7195cc2c1163ad","after":"6cb83cfaa4f8233cc49c80a974ba92c214c94024","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-04-02T11:55:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"added blacklisting to uploader","shortMessageHtmlLink":"added blacklisting to uploader"}},{"before":"243e1f432c2ce6dc9cbf82148b39843fea94a967","after":"661de702221d941c640900d6eb7195cc2c1163ad","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-03-26T14:38:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"added processing of project p34560","shortMessageHtmlLink":"added processing of project p34560"}},{"before":"a6ce337b07e76dd9ff544214898b1b9ec327cee4","after":"243e1f432c2ce6dc9cbf82148b39843fea94a967","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-03-11T11:44:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"bug fix on parsing older sample names","shortMessageHtmlLink":"bug fix on parsing older sample names"}},{"before":"176e150bbe27bbeb2343932149682ed4279d2752","after":"a6ce337b07e76dd9ff544214898b1b9ec327cee4","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-03-11T11:31:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"update blacklist","shortMessageHtmlLink":"update blacklist"}},{"before":"1e9ef58d73638c29c6e06638bd5a1e793dc71059","after":"176e150bbe27bbeb2343932149682ed4279d2752","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-03-05T10:52:43.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"fix batman amplicon_coverage","shortMessageHtmlLink":"fix batman amplicon_coverage"}},{"before":"3b9b137b68bfc944a7e8811c633a733d46decb7f","after":"1e9ef58d73638c29c6e06638bd5a1e793dc71059","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-29T19:51:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"bug fixes","shortMessageHtmlLink":"bug fixes"}},{"before":"e5367e218bf68ca8e6d16c827231f5d33b15d99d","after":"3b9b137b68bfc944a7e8811c633a733d46decb7f","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-09T19:02:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"pangolin version and output saved to log files","shortMessageHtmlLink":"pangolin version and output saved to log files"}},{"before":"11603c4c4672f7f9d091efe0c5eff0632b29823a","after":"e5367e218bf68ca8e6d16c827231f5d33b15d99d","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-09T18:28:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"add reproducibility information to statusfiles","shortMessageHtmlLink":"add reproducibility information to statusfiles"}},{"before":"f7580cafc6a654cb73c5f2e391ceb16cd6386e0d","after":"11603c4c4672f7f9d091efe0c5eff0632b29823a","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-08T18:40:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"Documentation of VM annotation","shortMessageHtmlLink":"Documentation of VM annotation"}},{"before":"1ce30d94f3251372ee10546ae60db6a3b4710c7d","after":"f7580cafc6a654cb73c5f2e391ceb16cd6386e0d","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-07T14:02:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"bug fixes","shortMessageHtmlLink":"bug fixes"}},{"before":"0b72f3a40aca00f6b8f0d43fdf2fc5162c365bc4","after":"1ce30d94f3251372ee10546ae60db6a3b4710c7d","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-05T17:22:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"fix viloca restart logic","shortMessageHtmlLink":"fix viloca restart logic"}},{"before":"26dc529f9050f3bbe546393fe5b46d6da2f60291","after":"0b72f3a40aca00f6b8f0d43fdf2fc5162c365bc4","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-05T17:06:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"fix amplicon cov backup status test","shortMessageHtmlLink":"fix amplicon cov backup status test"}},{"before":"2fb43d4a8c71a86cf7351cb11b6a931c47d7e65f","after":"26dc529f9050f3bbe546393fe5b46d6da2f60291","ref":"refs/heads/vm_ww_viloca_automation","pushedAt":"2024-02-05T15:25:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mcarrara-bioinfo","name":"mcarrara","path":"/mcarrara-bioinfo","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/19552826?s=80&v=4"},"commit":{"message":"activate backups","shortMessageHtmlLink":"activate backups"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEfADDOgA","startCursor":null,"endCursor":null}},"title":"Activity ยท cbg-ethz/pangolin"}