glimmergff_to_proteins.py / Reordering Fasta file

[zeynepkurtw]

Hi,

Thank you for this very useful script!!

I was wondering if it's possible to create the protein multi fasta file with the order of ref_file (contigs) instead of the glimmer_file (gff) file?

I've re-ordered my assembly from large contigs to smaller ones. However, when I run this script I got my protein multi fasta file in the order of glimmer.gff instead of the contigs.

Regards,
Zeynep