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Spend too long times to run hifiasm #647
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same question!!! |
same issue here!! |
@pashapu43 Could you please show the log file? Sorry for the late reply since I was quite busy this month. |
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same question and same status in the log. The final statu is [M::uidx_write] Index has been written. |
I feel like sometimes hifiasm is just too slow. In this case, please just wait for the completion. Another possibility is there is not enough RAM. |
Your tool is impressive, but I seem to be encountering an issue with the processing time. After executing the command:
hifiasm -o total_add.asm -t 150 --n-hap 6 --ul ont.sup.pass.fq.gz --ul-cut 500 --h1 hic_R1_clean.fq.gz --h2 hic_R2_clean.fq.gz Hifi_total.fastq.gz 2>hifiasmtotal_new2_nohup.txt &
I haven't received the contigs despite the command running for 6236425 hours. This delay has me quite concerned.
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