We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
[M::adjust_utg_by_primary] primary contig coverage range: [59, infinity] Writing sd.bp.p_ctg.gfa to disk... [M::reduce_hamming_error_adv::2.146] # inserted edges: 3262, # fixed bubbles: 110 [M::adjust_utg_by_trio] primary contig coverage range: [59, infinity] [M::recall_arcs] # transitive arcs::950 [M::recall_arcs] # new arcs::359154, # old arcs::272606 ERROR ERROR ERROR [M::clean_trio_untig_graph] # adjusted arcs::10 [M::adjust_utg_by_trio] primary contig coverage range: [59, infinity] [M::recall_arcs] # transitive arcs::2054 [M::recall_arcs] # new arcs::371220, # old arcs::282894 ERROR-set_utg_offset [M::clean_trio_untig_graph] # adjusted arcs::18 [M::output_trio_graph_joint] dedup_base::54109272, miss_base::0
The text was updated successfully, but these errors were encountered:
It looks fine since ERROR is a warning in most cases. The final assembly size is always larger than the estimated size. This is because k-mer-based estimated size may underestimate repeats. But if the final assembly is too large, please see: https://hifiasm.readthedocs.io/en/latest/faq.html#why-the-size-of-primary-assembly-or-partially-phased-assembly-is-much-larger-than-the-estimated-genome-size.
Sorry, something went wrong.
No branches or pull requests
[M::adjust_utg_by_primary] primary contig coverage range: [59, infinity]
Writing sd.bp.p_ctg.gfa to disk...
[M::reduce_hamming_error_adv::2.146] # inserted edges: 3262, # fixed bubbles: 110
[M::adjust_utg_by_trio] primary contig coverage range: [59, infinity]
[M::recall_arcs] # transitive arcs::950
[M::recall_arcs] # new arcs::359154, # old arcs::272606
ERROR
ERROR
ERROR
[M::clean_trio_untig_graph] # adjusted arcs::10
[M::adjust_utg_by_trio] primary contig coverage range: [59, infinity]
[M::recall_arcs] # transitive arcs::2054
[M::recall_arcs] # new arcs::371220, # old arcs::282894
ERROR-set_utg_offset
[M::clean_trio_untig_graph] # adjusted arcs::18
[M::output_trio_graph_joint] dedup_base::54109272, miss_base::0
The text was updated successfully, but these errors were encountered: