-
Notifications
You must be signed in to change notification settings - Fork 1
/
averagegroups.qmd
70 lines (50 loc) · 1.87 KB
/
averagegroups.qmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
---
title: "Average Groups"
author: "Cox Lab"
format:
html:
toc: true
toc-depth: 4
toc-expand: false
number-sections: true
number-depth: 4
editor: source
date: today
bibliography: references.bib
---
# General
- **Type:** - Matrix Processing
- **Heading:** - Annot. rows
- **Source code:** [AverageGroups.cs](https://github.com/JurgenCox/perseus-plugins/blob/master/PerseusPluginLib/AnnotRows/AverageGroups.cs)
# Brief description
Main columns are averaged over groups. This requires that at least one categorical annotation row is defined.
Output: Averaged main matrix containing as many columns as there were groups defined.
```{=html}
<!-- This comment and the line above it must be preserved when editing this file!
The recommended sections are these, but they may be changed on a case by case basis.
===== Detailed description =====
===== Parameters =====
===== Theoretical background =====
===== Examples =====
Make changes only below this line! -->
```
# Parameters
## Grouping
Defines, which grouping specified in a categorical row should be used to average values (default: first categorical row in the matrix).
## Average type
Specifies which operation should be applied for the averaging (default: Median). The operation can be selected from a predefined list:
- Median
- Mean
- Sum
- Geometric mean
## Min. valid values per group
Defines the minimal values a group must contain to calculate the average (default: 1).
## Keep original data
If checked the original data will be kept In the output matrix (default: unchecked).
## Add variation
Specifies, whether a measure of group-wise variation should be calculated and displayed in a numerical column (default: `<None>`). The measure can be selected from a predefined list:
- `<None>`
- Standard deviation
- Error of mean
# Parameter window
![](images/annot.rows-average_groups-edited.png)