{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":509603889,"defaultBranch":"main","name":"shrimPy","ownerLogin":"czbiohub-sf","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-07-01T22:31:26.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/28747162?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1721166881.0","currentOid":""},"activityList":{"items":[{"before":"5364a53e920aad4faac42586d5fcd3a5cd079d5f","after":"828bf00b53d3a5423139453baee57e0b8d5b4add","ref":"refs/heads/stitch_images_v2","pushedAt":"2024-07-18T02:30:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"add robustness for col shifts","shortMessageHtmlLink":"add robustness for col shifts"}},{"before":"e22e19cb0fe7fd2efc11e6b9c5d4bc38ebb4019e","after":"5364a53e920aad4faac42586d5fcd3a5cd079d5f","ref":"refs/heads/stitch_images_v2","pushedAt":"2024-07-17T22:13:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"update example config file","shortMessageHtmlLink":"update example config file"}},{"before":"2d31c616b36998a286fa0fdc9ef66b005cd8912d","after":"e22e19cb0fe7fd2efc11e6b9c5d4bc38ebb4019e","ref":"refs/heads/stitch_images_v2","pushedAt":"2024-07-17T22:03:07.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"expand documentation","shortMessageHtmlLink":"expand documentation"}},{"before":"e9dede36bfed141c2c5688a4b08cea88d172c27b","after":"2d31c616b36998a286fa0fdc9ef66b005cd8912d","ref":"refs/heads/stitch_images_v2","pushedAt":"2024-07-17T01:50:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"improvements and bugfixes","shortMessageHtmlLink":"improvements and bugfixes"}},{"before":null,"after":"f8b9ad7835b4a46346c34eb5b5fbc816921a4beb","ref":"refs/heads/porting_ip_funcs","pushedAt":"2024-07-16T21:54:41.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"edyoshikun","name":"Eduardo Hirata-Miyasaki","path":"/edyoshikun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10470962?s=80&v=4"},"commit":{"message":"removing the multiprocessing functions to iohub","shortMessageHtmlLink":"removing the multiprocessing functions to iohub"}},{"before":"5828aa0465f77dd46d67f8518a87006b9d1aa6c6","after":"d8678d802b52830e6241fe1c679bc7a3c542a7d9","ref":"refs/heads/concat_cli","pushedAt":"2024-07-16T19:05:58.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"talonchandler","name":"Talon Chandler","path":"/talonchandler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9554101?s=80&v=4"},"commit":{"message":"black","shortMessageHtmlLink":"black"}},{"before":"05b8907322e859e9318a576e006b72fd600a6cd4","after":"e9dede36bfed141c2c5688a4b08cea88d172c27b","ref":"refs/heads/stitch_images_v2","pushedAt":"2024-07-16T01:05:06.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"multiwell stitching with slurm","shortMessageHtmlLink":"multiwell stitching with slurm"}},{"before":"60cb866b842c59892db28014779fb4fc690e9902","after":"97fcbd207f4389038dfe79cd5894fda5071e7133","ref":"refs/heads/fix_tc_parallel","pushedAt":"2024-07-16T00:18:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edyoshikun","name":"Eduardo Hirata-Miyasaki","path":"/edyoshikun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10470962?s=80&v=4"},"commit":{"message":"removing unneccesary logging","shortMessageHtmlLink":"removing unneccesary logging"}},{"before":null,"after":"60cb866b842c59892db28014779fb4fc690e9902","ref":"refs/heads/fix_tc_parallel","pushedAt":"2024-07-16T00:08:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"edyoshikun","name":"Eduardo Hirata-Miyasaki","path":"/edyoshikun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10470962?s=80&v=4"},"commit":{"message":"patching the error in our function that parallelizes over t and c.","shortMessageHtmlLink":"patching the error in our function that parallelizes over t and c."}},{"before":"3133e560aa402a9311b55ce3162120be9b580496","after":"5828aa0465f77dd46d67f8518a87006b9d1aa6c6","ref":"refs/heads/concat_cli","pushedAt":"2024-07-15T22:25:44.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"edyoshikun","name":"Eduardo Hirata-Miyasaki","path":"/edyoshikun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10470962?s=80&v=4"},"commit":{"message":"Merge branch 'main' into concat_cli","shortMessageHtmlLink":"Merge branch 'main' into concat_cli"}},{"before":"8e563f875c93bf0e2cf186d5254dfd4cee9a836a","after":"3133e560aa402a9311b55ce3162120be9b580496","ref":"refs/heads/concat_cli","pushedAt":"2024-07-15T22:23:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edyoshikun","name":"Eduardo Hirata-Miyasaki","path":"/edyoshikun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10470962?s=80&v=4"},"commit":{"message":"consistent use of quotes","shortMessageHtmlLink":"consistent use of quotes"}},{"before":"07ca3ab0c355ddd34bba59981b5d3bdfa59b0221","after":"05b8907322e859e9318a576e006b72fd600a6cd4","ref":"refs/heads/stitch_images_v2","pushedAt":"2024-07-15T21:35:34.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"Merge branch 'main' into stitch_images_v2","shortMessageHtmlLink":"Merge branch 'main' into stitch_images_v2"}},{"before":"8c682752508fbe409fea4facdcc22a66f56e1c17","after":"162da5117a12137827368bb36eba0c55deef2647","ref":"refs/heads/main","pushedAt":"2024-07-11T23:57:27.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"GPU deskew (#146)\n\n* non-working draft\r\n\r\n* minimal monai deskew\r\n\r\n* remove profiling\r\n\r\n* isort\r\n\r\n* depend on monai\r\n\r\n* clean up\r\n\r\n* revert changed test\r\n\r\n* remove unused `order` and `cval` options\r\n\r\n* use `to.(\"cuda\")` instead of `transforms.ToDevice(\"cuda\")`\r\n\r\n* keep data on CPU by default\r\n\r\n* style\r\n\r\n* bumping iohub as well\r\n\r\n* Update raw_data type casting\r\n\r\nCo-authored-by: Ziwen Liu <67518483+ziw-liu@users.noreply.github.com>\r\n\r\n---------\r\n\r\nCo-authored-by: Ivan Ivanov \r\nCo-authored-by: Eduardo Hirata-Miyasaki \r\nCo-authored-by: Ziwen Liu <67518483+ziw-liu@users.noreply.github.com>","shortMessageHtmlLink":"GPU deskew (#146)"}},{"before":"2e991ac3741932be1f8848152ea1dde084411380","after":"d2487e57505d7b565a587aa38d40deb8faeb0b69","ref":"refs/heads/monai-deskew","pushedAt":"2024-07-11T23:02:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"Update raw_data type casting\n\nCo-authored-by: Ziwen Liu <67518483+ziw-liu@users.noreply.github.com>","shortMessageHtmlLink":"Update raw_data type casting"}},{"before":"ac4e9b05157440b7138b5b06123252de701d228c","after":"2e991ac3741932be1f8848152ea1dde084411380","ref":"refs/heads/monai-deskew","pushedAt":"2024-07-11T22:57:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edyoshikun","name":"Eduardo Hirata-Miyasaki","path":"/edyoshikun","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/10470962?s=80&v=4"},"commit":{"message":"bumping iohub as well","shortMessageHtmlLink":"bumping iohub as well"}},{"before":"ec38003605cff2dd82de81347ab5604e38b46301","after":null,"ref":"refs/heads/stabilization_yml","pushedAt":"2024-07-11T22:36:15.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"talonchandler","name":"Talon Chandler","path":"/talonchandler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9554101?s=80&v=4"}},{"before":"af8fa9cf7de3a8064a5b0d7581b3f1e012aca1e2","after":null,"ref":"refs/heads/merging_function","pushedAt":"2024-07-11T22:35:53.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"talonchandler","name":"Talon Chandler","path":"/talonchandler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9554101?s=80&v=4"}},{"before":"f878ba868f0fbd4c3310aa139f6866377ef3b2a9","after":null,"ref":"refs/heads/fix_apply_affine","pushedAt":"2024-07-11T22:35:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"talonchandler","name":"Talon Chandler","path":"/talonchandler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9554101?s=80&v=4"}},{"before":"1f2ca0369a5a46720a79cf5184884c674171e7f9","after":null,"ref":"refs/heads/measure_psf","pushedAt":"2024-07-11T22:34:54.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"talonchandler","name":"Talon Chandler","path":"/talonchandler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9554101?s=80&v=4"}},{"before":"a725b6384351209ac7e79a8e64d7e498ab4110b2","after":"c83f113a84cd50432b9a7805ef4e052f28184228","ref":"refs/heads/improve-affine-docs","pushedAt":"2024-07-11T22:31:01.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"talonchandler","name":"Talon Chandler","path":"/talonchandler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9554101?s=80&v=4"},"commit":{"message":"add intended workflow to docstrings","shortMessageHtmlLink":"add intended workflow to docstrings"}},{"before":"9e7cf36756232ede1e72ccee83045def6cb4dd63","after":"ac4e9b05157440b7138b5b06123252de701d228c","ref":"refs/heads/monai-deskew","pushedAt":"2024-07-11T19:29:02.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"Merge branch 'main' into monai-deskew","shortMessageHtmlLink":"Merge branch 'main' into monai-deskew"}},{"before":"045744b9049d9e0312081eba07a2d4134fab2c91","after":null,"ref":"refs/heads/fix_numpy_dep","pushedAt":"2024-07-11T19:27:18.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"}},{"before":"570ccfd46df9af2d9c57beb1514dff803efa82e4","after":"8c682752508fbe409fea4facdcc22a66f56e1c17","ref":"refs/heads/main","pushedAt":"2024-07-11T19:27:13.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"Restrict to numpy<2 (#149)\n\nrestrict to numpy<2","shortMessageHtmlLink":"Restrict to numpy<2 (#149)"}},{"before":null,"after":"045744b9049d9e0312081eba07a2d4134fab2c91","ref":"refs/heads/fix_numpy_dep","pushedAt":"2024-07-11T18:40:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"restrict to numpy<2","shortMessageHtmlLink":"restrict to numpy<2"}},{"before":"254cb367cc97b6aab6529b6bd9e83877dea2b9f1","after":"9e7cf36756232ede1e72ccee83045def6cb4dd63","ref":"refs/heads/monai-deskew","pushedAt":"2024-07-11T18:02:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"Merge branch 'main' into monai-deskew","shortMessageHtmlLink":"Merge branch 'main' into monai-deskew"}},{"before":"3d86dcbf1b89f970e6ca1c42fcff8582e99827ff","after":null,"ref":"refs/heads/debug_test_stabilization","pushedAt":"2024-07-11T18:00:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"}},{"before":"7c7f9646189d369d3f499ad4cf87073481484752","after":"570ccfd46df9af2d9c57beb1514dff803efa82e4","ref":"refs/heads/main","pushedAt":"2024-07-11T18:00:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"Fix bug in test_estimate_stabilization (#148)\n\nfix bug in non-integer z_idx","shortMessageHtmlLink":"Fix bug in test_estimate_stabilization (#148)"}},{"before":null,"after":"3d86dcbf1b89f970e6ca1c42fcff8582e99827ff","ref":"refs/heads/debug_test_stabilization","pushedAt":"2024-07-11T00:25:33.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"fix bug in non-integer z_idx","shortMessageHtmlLink":"fix bug in non-integer z_idx"}},{"before":"86bc44e212db04f0fd7ef003bd031ec7d8befd87","after":"254cb367cc97b6aab6529b6bd9e83877dea2b9f1","ref":"refs/heads/monai-deskew","pushedAt":"2024-07-10T21:54:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"style","shortMessageHtmlLink":"style"}},{"before":"46a2b7ca9a7e1da146d50e4dcf5c552dfd3e3d4f","after":"86bc44e212db04f0fd7ef003bd031ec7d8befd87","ref":"refs/heads/monai-deskew","pushedAt":"2024-07-10T21:33:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ieivanov","name":"Ivan Ivanov","path":"/ieivanov","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11934632?s=80&v=4"},"commit":{"message":"keep data on CPU by default","shortMessageHtmlLink":"keep data on CPU by default"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEgm6KnAA","startCursor":null,"endCursor":null}},"title":"Activity ยท czbiohub-sf/shrimPy"}