B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ
This README would normally document whatever steps are necessary to get this plugin up and running on Icy.
- This repository contains the code of the BUnwarp plugin adapted for working with big images.
- Note: This plugin is an adaptation of the BUnwarpJ plugin available for ImageJ. Go to BUnwarpJ
To set up this plugin in a development environment you should follow these steps
- Have a version of Java JDK superior or equal to 8. Java download page.
- Have the latest version of Icy installed on your machine. Icy download page
- Have Gradle installed to be able to download dependencies, create the eclipse project, and to produce jars as well. Gradle download page
- Have Eclipse IDE installed and configured for working with Icy. Icy4Eclipse plugin installation manual
- Make sure to have the environment variable ICY_HOME pointing to the forlder containing icy installation folder.
- Once downloaded the code, open a terminal on the code and type
This code will download and set the project dependencies and create the eclipse project to work with.
cd BUnwarp gradle eclipse - Open eclipse and import an existing project specifying the location of the project created with gradle.
- Once the project is open in the workspace you should be able to open icy and find the following plugins.
- BigImageBUnwarp: Used to register two large images
- BUnwarpSimple: Adaptation of the original BUnwarpJ plugin from ImageJ
- LoadBigImage: Loads a large image on icy (either by downsampling or by loading a particular tile)
- BigImageThresholding: Performs a thresholding filter on a large image.
- SaveBigImage: Saves a image on icy by tiles (Test plugin)
- BigImageConvertToTiff: Converts an image file from any format to a large tiff.
- Code: Daniel Gonzalez
- Code review: Vannary Meas-Yedid
- Original BUnwarpJ plugin: Go to BUnwarpJ
- Daniel Felipe Gonzalez Obando: ([email protected])