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/bin/cgHap2MHBs_parallel.pl #9

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qinzhang0824 opened this issue Jul 5, 2019 · 2 comments
Open

/bin/cgHap2MHBs_parallel.pl #9

qinzhang0824 opened this issue Jul 5, 2019 · 2 comments

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@qinzhang0824
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Hi dinhdiep,
I want to use your method to generate methylation haplotype blocks.
When running your script for Identifying the methylation haplotype blocks:
/bin/cgHap2MHBs_parallel.pl [hapInfo file] [min R2] [snpBed file] [outPrefix] ，what's type file "[snpBed file]" should be given ? It is the files in "data" folder named snp138_part_.gz ? I have tried used those snp138_part_.gz files, but couldn't got the expected results , what's the potential problem ?Can you help me address this problem? Thank you very much!
Best wishes!
@eggland123
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The same problem. What is the snpBedFile, which is not mentioned in the description? @dinhdiep

Thank you so much!

@hmyh1202
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May be the genome cov bed file.

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@hmyh1202 @eggland123 @qinzhang0824