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dvc.yaml
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dvc.yaml
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stages:
restructure:
cmd: python3 src/restructure.py assets/data/raw/*.csv
deps:
- assets/data/raw
- src/restructure.py
outs:
- assets/data/restructured
featurize:
cmd: python3 src/featurize.py assets/data/restructured/*.csv
deps:
- assets/data/restructured
- src/featurize.py
outs:
- assets/data/featurized
- assets/data/input_columns.csv
params:
- featurize.delete
- featurize.features
- featurize.remove
- featurize.breathing_min
- featurize.breathing_max
- featurize.heartrate_min
- featurize.heartrate_max
- featurize.scale
- featurize.range_window
- featurize.range_smoothing
- featurize.slope_shift
- featurize.slope_smoothing
- featurize.slope_abs
- featurize.diff_targets
split:
cmd: python3 src/split.py assets/data/featurized/*.csv
deps:
- assets/data/featurized
- src/split.py
outs:
- assets/data/split
params:
- split.train_split
scale:
cmd: python3 src/scale.py assets/data/split/*.csv
deps:
- assets/data/split
- src/scale.py
outs:
- assets/data/scaled
params:
- scale.method
- scale.output
sequentialize:
cmd: python3 src/sequentialize.py assets/data/scaled/*.npz
deps:
- assets/data/scaled
- src/sequentialize.py
- src/preprocess_utils.py
outs:
- assets/data/sequentialized
params:
- sequentialize.hist_size
- sequentialize.use_elements
- sequentialize.target_mean_window
- train.net
combine:
cmd: python3 src/combine.py assets/data/sequentialized/*.npz
deps:
- assets/data/sequentialized
- src/combine.py
outs:
- assets/data/combined
train:
cmd: python3 src/train.py assets/data/combined/train.npz
deps:
- assets/data/combined
- src/train.py
- src/model.py
- src/autoencoder.py
outs:
- assets/models
params:
- train.net
- train.n_epochs
- train.batch_size
- train.kernel_size
- train.weigh_samples
- train.autoencode
evaluate:
cmd: python3 src/evaluate.py assets/models/model.h5 assets/data/combined/test.npz
deps:
- assets/data/combined/test.npz
- assets/models/model.h5
- src/evaluate.py
metrics:
- assets/metrics/metrics.json:
cache: false
params:
- evaluate.smooth_targets