Add code for traveling time estimations #69
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Juanmontenegro99
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Feb 8, 2024
Juanmontenegro99
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Feb 23, 2024
* Review plots and prints in the demographics funcitons (#93) * Fix x-axis in population_pyramid plot * Fix x-axis in age_risk plot * Fix total population bug in pop_pyramid * Fix x-axis in age_risk plot total False * Fix morans_index legend * Fix \n bug in describe_ethnicity * Fix lint warnings * 96 endemic channels calculation of the standard deviation (#102) * Warning geom_mean geom_mean handle zero values but is important to notify the user that the input includes them * Fix geom_mean Improve exceptions handling and fixing error in habib's implementation * Fix geom_mean Fix optimization method in geom_mean * Create geom_sd Creation of a function to return the standard deviation of a vector according to the method used to determine the geometric mean * Change geom_mean epsilon Change of scale of epsilon value to reduce standard deviation of the series. However optimal epsilon value ramains to be researched. * Fix stats::sd usage * Change standard deviation approach As stated in #96 standard deviation should account for transformation of data * Update utils.R * Styling fix * Udpate/create documentation * export geom_sd * Update utils.R * Solve issue #96 * Change stop's for stopifnot's * Delete print of delta * Update test-utils.R * Update demographics.R * 101 index moran map (#103) * Update and add legends in morans_index map * Update colors in map * Style and documentation * Solve #101 * Fix conflicts * 97 population projections (#106) * Review plots and prints in the demographics funcitons (#93) * Fix x-axis in population_pyramid plot * Fix x-axis in age_risk plot * Fix total population bug in pop_pyramid * Fix x-axis in age_risk plot total False * Fix morans_index legend * Fix \n bug in describe_ethnicity * Fix lint warnings * update population projections post COVID-19 * Fix vignette bug * correct columns names * Fix population_pyramid function * Style corrections * Fix incidence_rate bug * Fix age_risk bug * Update tests for the new dimensions * Update tests for the new dimensions * Fix global functions definition * 100 describe ethnicity (#104) * #100 Fix lint * Change to message and fix order * update test and output function * 96 endemic channels calculation of the standard deviation (#107) * Warning geom_mean geom_mean handle zero values but is important to notify the user that the input includes them * Fix geom_mean Improve exceptions handling and fixing error in habib's implementation * Fix geom_mean Fix optimization method in geom_mean * Create geom_sd Creation of a function to return the standard deviation of a vector according to the method used to determine the geometric mean * Change geom_mean epsilon Change of scale of epsilon value to reduce standard deviation of the series. However optimal epsilon value ramains to be researched. * Fix stats::sd usage * Change standard deviation approach As stated in #96 standard deviation should account for transformation of data * Update utils.R * Styling fix * Udpate/create documentation * export geom_sd * Update utils.R * Solve issue #96 * Change stop's for stopifnot's * Delete print of delta * Update test-utils.R * Update demographics.R * Fix dimension bug * Styler * Update distance_matrix.rda * Revert "Update distance_matrix.rda" This reverts commit 7deba6f. * Update distance_matrix #69 * 99 describe occupation (#110) * Update occupational_plot * Separe describe_occupation and plot * Style * Enhancement in occupational plot * Change describe_occupation function * add gender and plot options to describe_occupation * Fix Occupational plot and create circular plot * First draft of circular plotting of occupations * Unify describe_occupation and occupation_plot * Update test fpr describe_occupation * Update vignette for new describe_occupation function * Update documentation * Style * update plot parameter occupation_plot * Style * update tests * Style * Fix igraph bug * fix distance_matrix bug * Add new library * Update tests for describe_occupation * Fix global parameters and descriptions * Revert "Fix global parameters and descriptions" This reverts commit 0f0d84d. * Update function descirptions * global variables occupation_plot * global variable occupation_plot_2 * Add warning to occupation_plot_2 * Documentation * Style * Fix note in check Replace double use of %>% by double use of subset function --------- Co-authored-by: juan-umana <[email protected]> * 108 vignette visualization (#109) * Update tables visualization * Update table visualization * Update paper * Update paper * Update functions description * Delete unused comments * Extends interpretation of morans_index * Update function descriptions and grammar * Update function descriptions and grammar * Style * Fix bug * Documentation * 85+ clarification * Update DESCRIPTION * Update README.md --------- Co-authored-by: juan-umana <[email protected]> --------- Co-authored-by: Juan D. Umaña <[email protected]>
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Add code and ask for review for distance matrix data
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