nanodisco_command_not_found

[SimonChen1997]

Hi,

I've installed nanodisco on HPC, but there were some errors:

INFO:    Downloading library image
1.9GiB / 1.9GiB [==================================================================================================] 100 % 7.8 MiB/s 0s
WARNING: integrity: signature not found for object group 1
WARNING: Skipping container verification
[uqzche26@bun013 ~]$ singularity build nd_env nanodisco.sif
INFO:    Starting build...
INFO:    Verifying bootstrap image nanodisco.sif
WARNING: integrity: signature not found for object group 1
WARNING: Bootstrap image could not be verified, but build will continue.
INFO:    Creating SIF file...
INFO:    Build complete: nd_env

When I typed "singularity run nd_analysis nanodisco", it showed:

/.singularity.d/runscript: 3: cd: can't cd to /home/nanodisco

But I was in the nanodisco container, since it showed: user26@nanodisco:/home/user$

But when I typed "nanodisco", it showed:

bash: nanodisco: command not found

Can anyone help me what was going on?

Cheers

[touala]

Hello @SimonChen1997,

Thank you for trying nanodisco. Could you try this approach with your data and let me know how it goes?

Alan

[SimonChen1997]

Hello @SimonChen1997,

Thank you for trying nanodisco. Could you try this approach with your data and let me know how it goes?

Alan

Hi Alan,

The installation is successful now.
I tried to read some tutorial materials for singularity, but I still don't know how to mount and bind paths. Is it necessary to bind and mount paths? Do you have some manuals for it?

Cheers,
Ziming

[touala]

Hi Ziming,

No, you shouldn't have to bind anything. As in the linked tutorial. Let me know how it goes.

Alan

[SimonChen1997]

Hi Ziming,

No, you shouldn't have to bind anything. As in the linked tutorial. Let me know how it goes.

Alan

Hi Alan,

Nanodico runs well so far. Thanks!!

Cheers,
Ziming