-
Notifications
You must be signed in to change notification settings - Fork 1
/
pyproject.toml
64 lines (46 loc) · 1.72 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
[project]
name = "SuperPang"
dynamic = ["version"]
authors = [
{ name="Fernando Puente-Sánchez", email="[email protected]" },
]
description = "Non-redundant pangenome assemblies from multiple genomes or bins"
readme = "README.md"
license = {file = "LICENSE"}
requires-python = ">=3.8"
classifiers = [
"Programming Language :: Python :: 3",
"License :: OSI Approved :: BSD License",
"Operating System :: OS Independent",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics"
]
keywords = ["bioinformatics", "assembly", "metagenomics", "microbial-genomics", "genomics"]
dependencies = [
"numpy",
"mOTUlizer==0.2.4",
"mappy",
"speedict"
] # we also need graph-tool but we need conda for that, and minimus2 but it is not a python package
[project.urls]
"Homepage" = "https://github.com/fpusan/SuperPang"
"Bug Tracker" = "https://github.com/fpusan/SuperPang/issues"
[project.scripts]
"SuperPang.py" = "superpang.scripts.SuperPang:cli"
"homogenize.py" = "superpang.scripts.homogenize:cli"
"test-SuperPang.py" = "superpang.scripts.test_SuperPang:main"
# We need an underscore in test_SuperPang because now we treat it as a module
# rather than an executable, and we can import with a dash on its name...
[tool.setuptools]
# If there are data files included in your packages that need to be
# installed, specify them here.
include-package-data = true
#[tool.setuptools.packages.find]
#where = ["src"]
[tool.setuptools.package-data]
"superpang.test_data" = ["*.fna"]
[tool.setuptools.dynamic]
version = {file = ["src/superpang/VERSION"]}
[build-system]
requires = ["setuptools>=61.0", "numpy", "cython"]
build-backend = "setuptools.build_meta"