GENEMEDE GAT TOOL

Genemede API and Tools

This repository contains code to run the GENEMEDE GAT server that takes API requests.

Installation

1. Download this repository via github git clone https://github.com/genemede/gnmd-gat
2. Setup a python virtual environment

cd gnmd-gat
python -m venv env
source env/bin/activate  |  env\Scripts\activate.bat `(if on windows)`
pip install -r requirements.txt

Usage

1. Create a .env file on the project root or copy .env.example to .env
2. Set ALLOW_NUKER=1 and ALLOW_FAKER=1 on the .env file
3. Create fake data by running python util.py faker
4. Start the GAT server python serve.py
5. The tool should serve requests at http://127.0.0.1:5342/v0/search?q=a&mtype=researcher for example.

There are several utility scripts available on util.py, you can run python util.py without any arguments to see a list of utilities available.