OTU Groupings Workflow Script

Table of Contents

What does this workflow do?
Why is this important?
Quickstart
Installing OTU_Grouping
OTU_Grouping Usage

What does this workflow do?

Why is this important?

Installing OTU_Groupings

Required software

• QIIME: download
• R: download

Required R Packages

• R plyr: documentation
• R dplyr: documentation

OTU_Grouping Usage

Example usage

./workflow.sh -b [biom table] -t [threshold]

Required arguments:

Option	Description
-b	Path of biom table to operate on
-t	Threshold for otu low abundance filtering