Git installation

For Windows.

https://phoenixnap.com/kb/how-to-install-git-windows

For MacOs

brew install git

For Debian based.

sudo apt install git

Git configuration

git config --global user.name "your-username"
git config --global user.email "your-email"

Cloning the project.

git clone https://github.com/hcinst/hhai-hackathon.git

Project Installation

pip install -r requirements.txt

Project Description

collapse.py - our original code for testing the successive collapsing method
megatiles.py - cleaned up and commented code with insertion points for hackathon code (search for “HACKATHON” in multiple places)
pilot_megatiles_experts.csv - annotations from two professional neuropathologists
pilot_megatiles_players.csv - annotations from 30 non-expert volunteers
megatiles_stepwise_collapsing.txt - pseudocode explaining our stepwise collapsing methods

Working on the project.

Run the following command to create a new branch and checkout on the branch.

git branch <your-name>-hackathon

git checkout <your-name>-hackathon

Add your algorithm.

Search for “HACKATHON” in multiple places in megatiles.py and add your algorithm there.

After adding your changes.

Commit your changes to the branch. and push to github.

git commit -am "your message"
git push

SLIDES: https://docs.google.com/presentation/d/1_fHSHrW9Blkx22NCbTP89_3nllzQXmqeuOX0cPc3jD8/edit?usp=sharing
GRAPHS: https://docs.google.com/spreadsheets/d/1rxcEidD33QYG6uIK8pvPzoRCvGNNiUg02u38A90dJ_w/edit?usp=sharing