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cProfile in codfreq-runner #9

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MarcNiebel opened this issue Feb 19, 2024 · 0 comments
Open

cProfile in codfreq-runner #9

MarcNiebel opened this issue Feb 19, 2024 · 0 comments

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@MarcNiebel
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Hi,
I am using the codfreq-runner Docker container and was wondering what the cProfile option is?

`Usage: fastq2codfreq [OPTIONS] WORKDIR

Options:
-p, --program [bowtie2|minimap2]
[required]
-r, --profile FILENAME [required]
--log-format [text|json] [default: text]
--enable-profiling / --disable-profiling
Enable/disable cProfile
--autopairing / --no-autopairing
Enable/disable automatical FASTQ pairing
algorithm
--workers INTEGER Number of sub-process workers to be used
[default: 8]
--help Show this message and exit.`

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