Release v1.4.0

• Allow custom y-axis label and scale
• Keep spaces in set names when filling empty intersections
• fixed bug for single set (degree of 1) intersection query when using fromExpression
• Changed point shape to 16
• Include set_size.show paramter and added documentation

Release v1.3.3

• Made element query compatible with check.names
• Removed border from active query bars
• Adjusted metadata heatmap and text title positions (centered title and removed 90 degree rotation)

Release v1.3.2

• update logarithmic axis and bar labels
• allow decimal values for log scales
• set intersection size axis min to 0 for log scales

Release v1.3.1

• Fixed log scale bugs
• Allow users to label their own queries, which can be displayed in query legend
• Fixed query legend positioning bug. Allows query legend to be placed on top or bottom of plot grid
• Fixed warnings and notes from new ggplot2 release
• Updated plot margin of intersection size bar plot

Release v1.3.0

• Introduce text scales for all plot axis labels, tick labels, set names, and numbers above the bars
• Remove names.size parameter and replace with a text scale
• Fix vignettes so plot size and text is appropriately scaled

Release v1.2.4

• Fix check.names bug so that it reorders the set size bar plot, not just the set labels
• Show all intersections when nintersects is set to NA

Release v1.2.3

• Allow user to keep order of sets entered when using sets parameter
• Updated Basic Usage vignette with example on how to do this

Release v1.2.2

• Support for log10 and log2 scale transformations

Release v1.2.1

• Updated vignettes
• Adjusted metadata plot text size for ggplot2 update
• Default gray88 color if matrix_rows metadata attribute used and no colors supplied
• Fixed metadata error so that matrix_rows may be used alone
• New link to UpSetR Shiny app in README

Release v1.2.0

• Options for set metadata heat map, boolean heat map, text, and bar plot
• Allow for multiple set metadata plots
• Option to color matrix background using metadata
• Created set.metadata.plots vignette
• Removed set metadata example from attribute.plots vignette