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Ifremer - SeBiMER Bioinformatics Tools

Home page of tools made by Ifremer's Bioinformatics Core Facility (SeBiMER)

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  1. samba samba Public archive

    Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

    Nextflow 10 5

  2. orson orson Public archive

    Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.

    Nextflow 5 3

  3. ToolDirectory ToolDirectory Public

    Dynamic visualization of softwares managed by a Bioinformatics Core Facility

    Python 4 1

  4. omics-catalog omics-catalog Public

    A FAIR toolkit for fast visualization of omics data and metadata

    JavaScript 4

  5. pallor pallor Public

    Nextflow 2 1

  6. celia celia Public

    Python 2

Repositories

Showing 10 of 12 repositories
  • ifremer-bioinformatics.github.io Public

    public web site of SeBiMER on Github

    ifremer-bioinformatics/ifremer-bioinformatics.github.io’s past year of commit activity
    JavaScript 0 2 0 1 Updated Jan 11, 2024
  • samba Public archive

    Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

    ifremer-bioinformatics/samba’s past year of commit activity
    Nextflow 10 MIT 5 4 0 Updated Jun 28, 2023
  • BeeDeeM-Tools Public archive

    Sequence management tools relying on the Bioinformatics Databank Manager System, BeeDeeM (miror).

    ifremer-bioinformatics/BeeDeeM-Tools’s past year of commit activity
    Java 0 AGPL-3.0 0 0 0 Updated Apr 14, 2023
  • ToolDirectory Public

    Dynamic visualization of softwares managed by a Bioinformatics Core Facility

    ifremer-bioinformatics/ToolDirectory’s past year of commit activity
    Python 4 Apache-2.0 1 0 0 Updated Apr 6, 2023
  • Katalog Public

    The Katalog library aims at displaying list of softwares (or databanks) using facetted data visualization system

    ifremer-bioinformatics/Katalog’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Apr 5, 2023
  • orson Public archive

    Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.

    ifremer-bioinformatics/orson’s past year of commit activity
    Nextflow 5 MIT 3 0 0 Updated Mar 3, 2023
  • omics-catalog Public

    A FAIR toolkit for fast visualization of omics data and metadata

    ifremer-bioinformatics/omics-catalog’s past year of commit activity
    JavaScript 4 0 0 0 Updated Feb 15, 2023
  • pallor Public
    ifremer-bioinformatics/pallor’s past year of commit activity
    Nextflow 2 AGPL-3.0 1 0 0 Updated Jun 13, 2022
  • FLORA Public

    workFLOw for Rnaseq analyses of the Amocyst project

    ifremer-bioinformatics/FLORA’s past year of commit activity
    Nextflow 1 MIT 1 0 0 Updated Mar 18, 2022
  • celia Public
    ifremer-bioinformatics/celia’s past year of commit activity
    Python 2 AGPL-3.0 0 0 0 Updated Jul 26, 2021
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