{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":652343666,"defaultBranch":"main","name":"pangene","ownerLogin":"lh3","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-06-11T21:04:14.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/480346?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1708618671.0","currentOid":""},"activityList":{"items":[{"before":"3d2078ce6e32b8359af7768e74bbb98c9c8c5e1c","after":"b4bc0939e31f8464d99f01755b8c46cf05a0cdbf","ref":"refs/heads/main","pushedAt":"2024-07-15T23:00:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"fixed a few typos suggested by reviewers","shortMessageHtmlLink":"fixed a few typos suggested by reviewers"}},{"before":"22c9f0c29e754958306da986b950cf3b9e11ee01","after":"3d2078ce6e32b8359af7768e74bbb98c9c8c5e1c","ref":"refs/heads/main","pushedAt":"2024-05-29T00:13:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"to be submitted\n\nwith suggestions from Maha","shortMessageHtmlLink":"to be submitted"}},{"before":"177264357d01c88e2f26613447c152066debc666","after":"22c9f0c29e754958306da986b950cf3b9e11ee01","ref":"refs/heads/main","pushedAt":"2024-05-27T00:26:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"update","shortMessageHtmlLink":"update"}},{"before":"f4ec8fa6653ce5eb142aacb355490f171511265d","after":"177264357d01c88e2f26613447c152066debc666","ref":"refs/heads/main","pushedAt":"2024-05-26T13:33:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"revision","shortMessageHtmlLink":"revision"}},{"before":"810197946e059ee10a7760307c550e772351a6f6","after":"f4ec8fa6653ce5eb142aacb355490f171511265d","ref":"refs/heads/main","pushedAt":"2024-03-04T14:10:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"added citation","shortMessageHtmlLink":"added citation"}},{"before":"a7ff684e1b5a572bb67ed12fe43484df11128aec","after":"810197946e059ee10a7760307c550e772351a6f6","ref":"refs/heads/main","pushedAt":"2024-02-27T18:33:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"changed to new web link","shortMessageHtmlLink":"changed to new web link"}},{"before":"02b1f7e96f3988cad99ee675791eaa181ca94fd4","after":"a7ff684e1b5a572bb67ed12fe43484df11128aec","ref":"refs/heads/main","pushedAt":"2024-02-27T15:39:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"improved formatting","shortMessageHtmlLink":"improved formatting"}},{"before":"a0b669864ecea9dea03c2a927be650830c5dec5c","after":"02b1f7e96f3988cad99ee675791eaa181ca94fd4","ref":"refs/heads/main","pushedAt":"2024-02-26T17:22:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"show pangene.liheng.org in Getting Started","shortMessageHtmlLink":"show pangene.liheng.org in Getting Started"}},{"before":"e3f3a5139df41135386568c0e4028b29c9d8dba1","after":"a0b669864ecea9dea03c2a927be650830c5dec5c","ref":"refs/heads/main","pushedAt":"2024-02-26T14:26:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"removed the OUP template (too large)","shortMessageHtmlLink":"removed the OUP template (too large)"}},{"before":"43d083287d105ff7170f7881426b46c3deb55b1b","after":"e3f3a5139df41135386568c0e4028b29c9d8dba1","ref":"refs/heads/main","pushedAt":"2024-02-25T20:00:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"added one more reference","shortMessageHtmlLink":"added one more reference"}},{"before":"1f7ea4bcd7705af5b675b52e41cb287f9d7fd3df","after":"43d083287d105ff7170f7881426b46c3deb55b1b","ref":"refs/heads/main","pushedAt":"2024-02-25T16:09:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"finalized funding and author contributions","shortMessageHtmlLink":"finalized funding and author contributions"}},{"before":"65ca9fe0846c536fbd8b798177002e9e38247a2b","after":"1f7ea4bcd7705af5b675b52e41cb287f9d7fd3df","ref":"refs/heads/main","pushedAt":"2024-02-24T05:37:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"update to the 151 Mtb dataset","shortMessageHtmlLink":"update to the 151 Mtb dataset"}},{"before":"c9e00aab16fae776e73fcbe2761c645ef98747c4","after":"65ca9fe0846c536fbd8b798177002e9e38247a2b","ref":"refs/heads/main","pushedAt":"2024-02-22T18:50:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"updated README","shortMessageHtmlLink":"updated README"}},{"before":"a9582c3ba735c08cb510512d675a5a1778835715","after":"c9e00aab16fae776e73fcbe2761c645ef98747c4","ref":"refs/heads/main","pushedAt":"2024-02-22T16:16:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"Release pangene-1.1 (r231)","shortMessageHtmlLink":"Release pangene-1.1 (r231)"}},{"before":"8b97aaa24a3728118f4bb40211249a0ea01858d7","after":"a9582c3ba735c08cb510512d675a5a1778835715","ref":"refs/heads/main","pushedAt":"2024-02-22T16:02:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"added test files for bubble detection","shortMessageHtmlLink":"added test files for bubble detection"}},{"before":"d284ed502b5b2460750d4e549acda33e8de5e245","after":"8b97aaa24a3728118f4bb40211249a0ea01858d7","ref":"refs/heads/main","pushedAt":"2024-02-22T15:52:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"more polishing","shortMessageHtmlLink":"more polishing"}},{"before":"4d47e115bb9a25241bc3150ff7d713a2040f2ffd","after":"d284ed502b5b2460750d4e549acda33e8de5e245","ref":"refs/heads/main","pushedAt":"2024-02-22T04:04:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"language polishing (unfinished yet)","shortMessageHtmlLink":"language polishing (unfinished yet)"}},{"before":"4484d551043a679c76b756a86e771210cbbe6fd4","after":"4d47e115bb9a25241bc3150ff7d713a2040f2ffd","ref":"refs/heads/main","pushedAt":"2024-02-21T23:05:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"spell check","shortMessageHtmlLink":"spell check"}},{"before":"6367e55c6754e74d436ade446f417e30f2e0c29d","after":"4484d551043a679c76b756a86e771210cbbe6fd4","ref":"refs/heads/main","pushedAt":"2024-02-21T16:22:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"initial draft finished","shortMessageHtmlLink":"initial draft finished"}},{"before":"8f37ba6c26e191d7272780d635da889fb6d20b4b","after":"6367e55c6754e74d436ade446f417e30f2e0c29d","ref":"refs/heads/main","pushedAt":"2024-02-21T04:09:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"described the 17q21.31 bubble","shortMessageHtmlLink":"described the 17q21.31 bubble"}},{"before":"a0cbe38146a210eea19cc0c629b11b1c351e941f","after":"8f37ba6c26e191d7272780d635da889fb6d20b4b","ref":"refs/heads/main","pushedAt":"2024-02-18T04:21:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"a paragraph on pseudogene; updated for new version","shortMessageHtmlLink":"a paragraph on pseudogene; updated for new version"}},{"before":"fc679b1f6571d67f18d54455ef41a19d5478d31f","after":"a0cbe38146a210eea19cc0c629b11b1c351e941f","ref":"refs/heads/main","pushedAt":"2024-02-17T20:14:01.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r223: option to drop single-exon genes\n\nalso changed joint pseudogene filtering","shortMessageHtmlLink":"r223: option to drop single-exon genes"}},{"before":"373733027d33ededca5591bd45c1bcd2d33496af","after":"fc679b1f6571d67f18d54455ef41a19d5478d31f","ref":"refs/heads/main","pushedAt":"2024-02-16T21:27:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r220: output supporting assemblies","shortMessageHtmlLink":"r220: output supporting assemblies"}},{"before":"8118f0cedba0a4ce878181ae86b9a32929838f67","after":"373733027d33ededca5591bd45c1bcd2d33496af","ref":"refs/heads/main","pushedAt":"2024-02-16T19:59:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"subsection on 100 human haplotypes","shortMessageHtmlLink":"subsection on 100 human haplotypes"}},{"before":"59dde3f47a8009dc4632f07cbeae77105fea45a7","after":"8118f0cedba0a4ce878181ae86b9a32929838f67","ref":"refs/heads/main","pushedAt":"2024-02-16T14:36:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r218: don't joinly filter pseudogenes by default","shortMessageHtmlLink":"r218: don't joinly filter pseudogenes by default"}},{"before":"cf1f5f32c3394e992b112f93271f863c8680863b","after":"59dde3f47a8009dc4632f07cbeae77105fea45a7","ref":"refs/heads/main","pushedAt":"2024-02-10T22:00:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"minor changes","shortMessageHtmlLink":"minor changes"}},{"before":"b54e5348dfe23530f911a80467fb23845100fff6","after":"cf1f5f32c3394e992b112f93271f863c8680863b","ref":"refs/heads/main","pushedAt":"2024-02-10T21:17:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"finished the method section","shortMessageHtmlLink":"finished the method section"}},{"before":"5711d03d4ef2cfbef34ced87ac63680c8eb2cf2c","after":"b54e5348dfe23530f911a80467fb23845100fff6","ref":"refs/heads/main","pushedAt":"2024-02-09T20:32:06.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r215: use the new algorithm by default","shortMessageHtmlLink":"r215: use the new algorithm by default"}},{"before":"b55d83bdd8736f41982bf843cc11b8f13871d84b","after":"5711d03d4ef2cfbef34ced87ac63680c8eb2cf2c","ref":"refs/heads/main","pushedAt":"2024-02-09T15:51:21.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"code refactoring, a little bit","shortMessageHtmlLink":"code refactoring, a little bit"}},{"before":"bf7e6dab832e800771d8fbaafa4f061d4ff259ac","after":null,"ref":"refs/heads/tex","pushedAt":"2024-02-09T03:06:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEgDFzIQA","startCursor":null,"endCursor":null}},"title":"Activity ยท lh3/pangene"}