hg19 genome

[v-mahughes]

Can you please link the fasta and gtf files that are used when "hg19" is entered as the 'reference' input?

[yihming]

Hi @v-mahughes ,

You may find the complete list of genome references used by Cellranger workflow at https://github.com/lilab-bcb/cumulus/blob/master/workflows/cellranger/index.tsv. The fasta and gtf files are inside the tarball.

To download the tarball you want to check, you may use gsutil command-line tool with requester pay feature (https://cloud.google.com/storage/docs/using-requester-pays#using).

Please let me know if you have any further question.

Sincerely,
Yiming

[v-mahughes]

Are these the same genomes you use for dropseq as well?