Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Is it correct to say "the more beneficial a mutation, the more often it arises independently"? #8

Open
AnonymousUserUse opened this issue Apr 27, 2023 · 0 comments

Comments

@AnonymousUserUse
Copy link

Is it correct to say "the more beneficial a mutation, the more often it arises independently"? @corneliusroemer

In my opinion, the benefit of a mutation and the independent appearance of a mutation are two different, not directly related features of a mutation. It is true that the independent appearance of a beneficial mutation is more likely to be found in the current surveillance system, but the independent appearance of a mutation itself is not related to the benefit of a mutation.

Even if one regards the sense of the independent appearance of a mutation found in surveillance, one cannot say with certainty that a beneficial mutation always arises independently and a mutation that arises frequently independently always has advantages. For the former, there are several beneficial mutations that have only been caught once, such as S:R346K in BA.1 and ORF1b:T1050N in BA.5.2. For the latter, this list includes a number of highly homoplasic mutations, most of which do not show any advantages.

It might be worth having a quantitative analysis for the correlation between the benefit of a mutation and the independent appearance (caught in surveillance) of a mutation, including or excluding the listed highly homoplasic mutations. I would not be surprised if there is a correlation between them, but I guess the correlation may only be moderate.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant