DESCRIPTION

Package: orthogene
Type: Package
Title: Interspecies gene mapping 
Version: 1.9.1
Authors@R:
    c( 
     person(given = "Brian",
           family = "Schilder",
           role = c("cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
    )      
Description: 
    `orthogene` is an R package for easy mapping of orthologous genes 
    across hundreds of species. It pulls up-to-date gene ortholog mappings 
    across **700+ organisms**. 
    It also provides various utility functions to aggregate/expand 
    common objects (e.g. data.frames, gene expression matrices, lists) 
    using **1:1**, **many:1**, **1:many** or **many:many** gene mappings, 
    both within- and between-species.  
URL: https://github.com/neurogenomics/orthogene 
BugReports: https://github.com/neurogenomics/orthogene/issues 
License: GPL-3
Depends: R (>= 4.1)
VignetteBuilder: knitr
biocViews:
    Genetics, ComparativeGenomics, Preprocessing, 
    Phylogenetics, Transcriptomics, GeneExpression
Imports: 
    dplyr,  
    methods, 
    stats,
    utils,
    Matrix,
    jsonlite,
    homologene,
    gprofiler2,
    babelgene,
    data.table,
    parallel, 
    ggplot2,
    ggpubr,
    patchwork,
    DelayedArray,
    grr, 
    repmis, 
    ggtree,
    tools
Suggests: 
    rworkflows, 
    remotes,
    knitr,
    BiocStyle,
    markdown,
    rmarkdown,
    testthat (>= 3.0.0),
    piggyback, 
    magick,
    GenomeInfoDbData,
    ape,
    phytools,
    rphylopic (>= 1.0.0),
    TreeTools,
    ggimage,
    OmaDB
RoxygenNote: 7.2.3
Encoding: UTF-8
Config/testthat/edition: 3
Config/rcmdcheck/_R_CHECK_FORCE_SUGGESTS_: false