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Push aligned sequences up to data.nextstrain.org for download availability #96

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emmahodcroft opened this issue Jul 25, 2022 · 0 comments
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enhancement New feature or request

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We currently provide links to download the curated sequences & metadata, which is great. However, many times one just wants to start with an aligned sequence set (particularly in cases when alignment can be tricky, as with MPX). We generate this as part of our workflow, it would be great to:

  • Add a rule that uploads aligned.fasta to data.nextstrain.org (either after alignment or at the end)
  • Include a link to this aligned file in the description at the bottom of builds (and in the github repo)
@emmahodcroft emmahodcroft added the enhancement New feature or request label Jul 25, 2022
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