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Add staging module for PhenoImager data #45

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chiarasch opened this issue Jul 5, 2024 · 0 comments
Open

Add staging module for PhenoImager data #45

chiarasch opened this issue Jul 5, 2024 · 0 comments
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enhancement Improvement for existing functionality

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@chiarasch
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Description of feature

Create a module to stage the PhenoImager .tif files for usage with Ashlar. PhenoImager produces float32 .tif files per tile per cycle. The staging module would transform float32 to uint16, extract metadata information and stack all .tif files into an ome.tif per cycle as Ashlar requires.
@chiarasch chiarasch added the enhancement Improvement for existing functionality label Jul 5, 2024
@chiarasch chiarasch self-assigned this Jul 5, 2024
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@chiarasch chiarasch

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@chiarasch