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Add an example for censoring and interpolating volumes in FMR data based on motion estimates #35

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ofgulban opened this issue Mar 7, 2023 · 0 comments

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@ofgulban
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ofgulban commented Mar 7, 2023

Requested by @ju-ec , initial script provided by @ju-ec . Items to consider:

  • Plots the motion estimates (as saved by BV)
  • Plot framewise displacement with respect to the PRT files (optional).
  • Plot a carpet plot to identify problematic volumes in the data.
  • Save an SDM file containing a predictor of spike volumes (*_FDspikes.sdm) as identified based on a FD threshold set by the user in the script.
  • Censor FMR volumes based on *_FDspikes.sdm.
  • Interpolate in place of the censored volumes using linear op spline interpolation.
@ofgulban ofgulban changed the title Add an example for censoring and interpolatting volumes in FMR data based on motion estimates Add an example for censoring and interpolating volumes in FMR data based on motion estimates Nov 10, 2023
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