{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"nallo","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":3,"issueCount":72,"starsCount":8,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T20:02:39.839Z"}},{"type":"Public","name":"test-datasets","owner":"genomic-medicine-sweden","isFork":true,"description":"Test data to be used for automated testing with the nf-core pipelines","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":329,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T20:01:15.506Z"}},{"type":"Public","name":"tomte","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":6,"starsCount":10,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-16T09:26:32.729Z"}},{"type":"Public","name":"taxprofiler","owner":"genomic-medicine-sweden","isFork":true,"description":"Taxonomic profiling of shotgun metagenomic data","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":18,"starsCount":0,"forksCount":32,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-12T09:00:23.215Z"}},{"type":"Public","name":"modules","owner":"genomic-medicine-sweden","isFork":true,"description":"Repository to host tool-specific module files for the Nextflow DSL2 community!","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":658,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T10:35:32.800Z"}},{"type":"Public","name":"meta-val","owner":"genomic-medicine-sweden","isFork":false,"description":"nf-core/taxprofiler post-processing; verification of classification results; consensus maps","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":3,"starsCount":1,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T07:08:07.100Z"}},{"type":"Public","name":"Twist_Solid","owner":"genomic-medicine-sweden","isFork":false,"description":"Pipeline for Solid tumours","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":7,"issueCount":21,"starsCount":3,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-09T15:58:56.199Z"}},{"type":"Public","name":"poppy","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":3,"starsCount":3,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-05T11:58:18.654Z"}},{"type":"Public","name":"raredisease","owner":"genomic-medicine-sweden","isFork":true,"description":"Call and score variants from WGS/WES of rare disease patients.","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":35,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-05T07:55:01.087Z"}},{"type":"Public","name":"pgx","owner":"genomic-medicine-sweden","isFork":false,"description":"Pharmacogenomics pipeline","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":1,"issueCount":4,"starsCount":8,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T09:21:20.288Z"}},{"type":"Public","name":"NGPIris","owner":"genomic-medicine-sweden","isFork":false,"description":"NGPIris 👁 (intelligence and repository interface software) is a light-weight tool for interacting with a Boto3 backed Hitachi Content Platform","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":18,"starsCount":0,"forksCount":3,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-27T13:23:29.516Z"}},{"type":"Public","name":"meta-vis","owner":"genomic-medicine-sweden","isFork":false,"description":"Visualisation of metagenomic analysis results","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":18,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-26T13:06:50.282Z"}},{"type":"Public","name":"jasen","owner":"genomic-medicine-sweden","isFork":false,"description":"Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.","allTopics":["pipeline","typing","clinical","resistance","microbial"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":35,"starsCount":9,"forksCount":9,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-26T08:58:41.919Z"}},{"type":"Public","name":".github","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T08:41:35.269Z"}},{"type":"Public","name":"Twist_Solid_pipeline_files","owner":"genomic-medicine-sweden","isFork":false,"description":"Design and filter files used by the pipeline ","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-19T06:58:13.919Z"}},{"type":"Public","name":"MIMOSA","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T13:38:59.437Z"}},{"type":"Public","name":"gms_16S","owner":"genomic-medicine-sweden","isFork":false,"description":"A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.","allTopics":[],"primaryLanguage":{"name":"Groovy","color":"#4298b8"},"pullRequestCount":0,"issueCount":10,"starsCount":5,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T07:44:05.276Z"}},{"type":"Public archive","name":"NGPGlue","owner":"genomic-medicine-sweden","isFork":false,"description":"Small scripts and other similar NGP solutions of sensitive nature","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T11:29:18.829Z"}},{"type":"Public archive","name":"RareDisease_RNA_workflow","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":2,"issueCount":3,"starsCount":2,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T08:53:37.708Z"}},{"type":"Public archive","name":"gmsmetapost","owner":"genomic-medicine-sweden","isFork":false,"description":"GMS Metagenomics post-classification","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":1,"issueCount":13,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T08:50:13.878Z"}},{"type":"Public archive","name":"validate-meta","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T08:32:13.589Z"}},{"type":"Public archive","name":"micro-site-data-sharing","owner":"genomic-medicine-sweden","isFork":false,"description":"This repo shares data between sites for the development of GMS-micro solutions.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-18T08:29:36.605Z"}},{"type":"Public","name":"GMS_RD_LR","owner":"genomic-medicine-sweden","isFork":false,"description":"GMS Best practises for long read analysis","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-26T10:59:23.695Z"}},{"type":"Public","name":"Information-specifications","owner":"genomic-medicine-sweden","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-22T10:22:06.908Z"}},{"type":"Public","name":"microbiology","owner":"genomic-medicine-sweden","isFork":false,"description":"A repo to collect information about all different projects we have in GMS-Micro","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-11T08:02:59.721Z"}},{"type":"Public","name":"gms-artic","owner":"genomic-medicine-sweden","isFork":true,"description":"A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).","allTopics":[],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":2,"issueCount":15,"starsCount":8,"forksCount":89,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-13T15:10:35.084Z"}},{"type":"Public","name":"docker-sc2reporter","owner":"genomic-medicine-sweden","isFork":false,"description":"Dockerized version of the sc2reporter program.","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":24,"starsCount":0,"forksCount":1,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-26T14:06:02.600Z"}},{"type":"Public","name":"nextflow-modules","owner":"genomic-medicine-sweden","isFork":true,"description":"Shared nextflow modules and assets","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-04-24T10:16:17.812Z"}},{"type":"Public","name":"taxpasta","owner":"genomic-medicine-sweden","isFork":true,"description":"TAXnomic Profile Aggregation and STAndardisation","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":6,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-06T15:49:03.483Z"}},{"type":"Public","name":"MultiQC","owner":"genomic-medicine-sweden","isFork":true,"description":"Aggregate results from bioinformatics analyses across many samples into a single report.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":591,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-07-29T11:39:25.793Z"}}],"repositoryCount":36,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"genomic-medicine-sweden repositories"}