{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"hatzakislab.github.io","owner":"hatzakislab","isFork":false,"description":"Source for the group website","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":5,"issueCount":2,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-23T15:17:53.719Z"}},{"type":"Public","name":"SEMORE","owner":"hatzakislab","isFork":false,"description":"SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.","allTopics":["machine-learning","fingerprinting","single-molecule-imaging","single-molecule-localization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-13T13:18:23.798Z"}},{"type":"Public","name":"POR-assays","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-05T21:26:34.574Z"}},{"type":"Public","name":"Diffusional-Fingerprinting","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":8,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-27T09:38:17.997Z"}},{"type":"Public","name":"DeepFRET-Model","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":1,"starsCount":7,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-08T04:22:26.329Z"}},{"type":"Public","name":"DeepFRET-GUI","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":10,"starsCount":8,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-24T12:23:14.246Z"}},{"type":"Public","name":"Pomegranate_FRETanalysis","owner":"hatzakislab","isFork":false,"description":"Script for the analysis of FRET traces using pomegranate and in-house written code","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-18T16:54:32.777Z"}},{"type":"Public","name":"Dopamine-Manuscript","owner":"hatzakislab","isFork":false,"description":"signal integration, drift correction and rate fitting","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-03-25T08:53:17.521Z"}},{"type":"Public","name":"REPLOM-analysis-tool","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-05T23:51:23.664Z"}},{"type":"Public","name":"SPARCLD","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-10-14T11:51:27.449Z"}},{"type":"Public","name":"liposome_intensity","owner":"hatzakislab","isFork":false,"description":"Python based script for extraction and analysis of .tif formatted image files. The script can extract the intensity from individual liposomes based in a changeable ROI size given initially and subtract local background","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-13T15:35:50.134Z"}},{"type":"Public","name":"cell_analyzer_pyy","owner":"hatzakislab","isFork":false,"description":"Cell analyzer HEK293/PYY/eYFP: Python based script for extraction and analysis of .tif formatted image files. The script will identify cells on a image based on set thresholds and parameters. From this a mask will be created to extract the intensity from up to three channels, here corresponding to signal from membrane stain (blue), yellow fluore…","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-13T15:34:54.321Z"}},{"type":"Public","name":"lipase_tracking","owner":"hatzakislab","isFork":false,"description":"Python Script for analysing .tif movies of lipases diffusing on a surface. Code used to make data for Bohr, S. S.-R. et al. Scientific Reports, 2019","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-13T15:32:27.295Z"}},{"type":"Public","name":"fretti_standalone","owner":"hatzakislab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-03-05T16:46:33.284Z"}},{"type":"Public","name":"nanobio1_2019","owner":"hatzakislab","isFork":false,"description":"Code to use in Nanobio1 course at UCPH, fall semester 2019","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-09-06T12:37:48.002Z"}}],"repositoryCount":15,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"hatzakislab repositories"}