{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"varfish-server","owner":"varfish-org","isFork":false,"description":"VarFish: comprehensive DNA variant analysis for diagnostics and research","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":160,"starsCount":43,"forksCount":11,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-18T18:32:01.462Z"}},{"type":"Public","name":"annonars","owner":"varfish-org","isFork":false,"description":"Genome annotation based on Rust and RocksDB","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":1,"issueCount":18,"starsCount":5,"forksCount":1,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-18T14:07:02.902Z"}},{"type":"Public","name":"varfish-db-downloader","owner":"varfish-org","isFork":false,"description":"Download public databases for VarFish","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":3,"starsCount":3,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-18T12:35:09.106Z"}},{"type":"Public","name":"mehari","owner":"varfish-org","isFork":false,"description":"VEP-like tool for sequence ontology and HGVS annotation of VCF files","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":4,"issueCount":30,"starsCount":14,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-18T11:31:00.077Z"}},{"type":"Public","name":"mehari-data-tx","owner":"varfish-org","isFork":false,"description":"Transcript data builds for mehari","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-16T10:04:39.777Z"}},{"type":"Public","name":"hgvs-rs","owner":"varfish-org","isFork":false,"description":"A port of biocommons/hgvs to the Rust programming language","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":1,"issueCount":13,"starsCount":11,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-16T09:40:54.540Z"}},{"type":"Public","name":"viguno","owner":"varfish-org","isFork":false,"description":"Versatile Interface for Genetics Utilization of Nice Ontologies","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T23:20:07.239Z"}},{"type":"Public","name":"varfish-server-worker","owner":"varfish-org","isFork":false,"description":"Rust-based background worker for varfish-server","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":5,"issueCount":13,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T14:29:12.318Z"}},{"type":"Public","name":"annonars-data-clinvar","owner":"varfish-org","isFork":false,"description":"Clinvar data builds for annonars","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"HCL","color":"#844FBA"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T12:54:46.917Z"}},{"type":"Public","name":"clinvar-this","owner":"varfish-org","isFork":false,"description":"ClinVar Submission API Made Easy","allTopics":["api","bioinformatics","variants","ncbi","clinvar"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":18,"starsCount":8,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T11:37:09.168Z"}},{"type":"Public","name":"clinvar-data-jsonl","owner":"varfish-org","isFork":false,"description":"Weekly ClinVar releases as JSONL with additonal useful files","allTopics":[],"primaryLanguage":null,"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T05:47:06.718Z"}},{"type":"Public","name":"varfish-cli","owner":"varfish-org","isFork":false,"description":"VarFish REST API client (CLI + Python package)","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":6,"starsCount":2,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-15T00:38:18.205Z"}},{"type":"Public","name":"varfish-docker-compose","owner":"varfish-org","isFork":false,"description":"(Next-generation; in-development) VarFish Docker Compose","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":2,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-11T12:56:35.897Z"}},{"type":"Public","name":"varfish-dev-docs","owner":"varfish-org","isFork":false,"description":"VarFish software development documentation","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":2,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-02T06:02:44.123Z"}},{"type":"Public","name":"varfish-installer","owner":"varfish-org","isFork":false,"description":"Script and Docker container for VarFish installation and data download","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-01T04:28:32.126Z"}},{"type":"Public","name":"seqrepo-rs","owner":"varfish-org","isFork":false,"description":"A port of biocommons/seqrepo to the Rust programming language","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":4,"issueCount":0,"starsCount":4,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-25T08:56:29.377Z"}},{"type":"Public","name":"scarus","owner":"varfish-org","isFork":false,"description":"Automated evaluation of ACMG rules","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":6,"issueCount":6,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T10:31:59.054Z"}},{"type":"Public","name":"varfish-landing-page","owner":"varfish-org","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Astro","color":"#ff5a03"},"pullRequestCount":0,"issueCount":5,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T05:52:00.883Z"}},{"type":"Public","name":"cada-prio","owner":"varfish-org","isFork":false,"description":"Re-implementation of the CADA phenotype-based prioritization algorithm","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":1,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-06T07:06:29.269Z"}},{"type":"Public","name":"rocksdb-utils-lookup","owner":"varfish-org","isFork":false,"description":"Utilities for using RocksDB as read-only lookup table (after initial bulk import)","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-22T09:55:35.417Z"}},{"type":"Public","name":"cadd-rest-api","owner":"varfish-org","isFork":false,"description":"Simple REST API wrapper for CADD-scripts","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-07T13:51:33.945Z"}},{"type":"Public","name":"cadd-rest-api-mock","owner":"varfish-org","isFork":false,"description":"Mocking the CADD REST API server for VarFish development","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T08:56:57.395Z"}},{"type":"Public","name":"varfish-org.github.io","owner":"varfish-org","isFork":false,"description":"GitHub pages website","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-25T07:29:44.224Z"}},{"type":"Public","name":"varfish-docker-compose-legacy","owner":"varfish-org","isFork":false,"description":"Setup VarFish as using Docker Compose","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":0,"issueCount":1,"starsCount":5,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T14:37:38.040Z"}},{"type":"Public","name":"varfish-data-igsr","owner":"varfish-org","isFork":false,"description":"Repository for building IGSR data sets for use in VarFish","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T14:37:29.934Z"}},{"type":"Public","name":"biocommons-bioutils-rs","owner":"varfish-org","isFork":false,"description":"(Partial) port of biocommons/bioutils to Rust","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T14:36:55.160Z"}},{"type":"Public archive","name":"varfish-anno","owner":"varfish-org","isFork":false,"description":"DEPRECATED Convert annotation database files to Var:fish: import format","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T10:54:28.879Z"}},{"type":"Public archive","name":"varfish-installer-LEGACY","owner":"varfish-org","isFork":false,"description":"DEPRECATED, use https://github.com/bihealth/varfish-docker-compose instead","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-24T10:53:19.707Z"}},{"type":"Public archive","name":"varfish-annotator","owner":"varfish-org","isFork":false,"description":"(Legacy) Annotate variants for import into VarFish server.","allTopics":["genetics","vcf","variant-filtration","varfish","variant-prioritization"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":1,"issueCount":6,"starsCount":5,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-23T16:56:25.205Z"}},{"type":"Public","name":".github","owner":"varfish-org","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-23T11:49:47.856Z"}}],"repositoryCount":35,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"varfish-org repositories"}