error

[kdyoung100]

./sistr
Traceback (most recent call last):
File "./sistr", line 7, in
from sistr.sistr_cmd import main
File "/home/tools/anaconda3/lib/python3.7/site-packages/sistr/sistr_cmd.py", line 14, in
from sistr.src.blast_wrapper import BlastRunner
File "/home/tools/anaconda3/lib/python3.7/site-packages/sistr/src/blast_wrapper/init.py", line 9, in
from pandas.io.common import EmptyDataError
ImportError: cannot import name 'EmptyDataError' from 'pandas.io.common' (/home/tools/anaconda3/lib/python3.7/site-packages/pandas/io/common.py)

[apetkau]

Hello @kdyoung100 ,

How did you install SISTR? It looks like it's through conda, but I suspect it's possible you have too recent of a version of pandas installed. Did you install by conda install sistr_cmd or by pip install sistr_cmd?

If you used pip could you try conda install instead? I believe conda install limits the version of pandas to <=1.0.5.

[kbessonov1984]

Yes, please downgrade pandas to version 1.0.5. The `EmptyDataError` class was moved to other submodule in posterior pandas versions. Next release of SISTR will make it compatible with the newest and previous pandas versions. The conda recipe indeed limits upper pandas version to 1.0.5 for the very same reason.