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Neither of these samples have a prediction in the o_antigen column, but when I blast them against your database, they have quite a good match (97% similarity, >99% coverage) to "304|584|1,4,12,27|B" from the wzx database. Is this match not good enough to call the O antigen? Or is there uncertainty about record 304?
They are quite similar results across most fields (and for my blast results against the wxy and wxz databases), but they have different results in the output. How come?
Here are the fasta files, in case you want to dig in.
Hello,
We've isolated some subsp salamaes for one of our projects. I have a few questions about the SISTR output for these isolates:
<style> </style>Here are the fasta files, in case you want to dig in.
https://www.dropbox.com/scl/fi/ppkiflqyvtwrn28nah9s6/CQJ127_S25_L001.fna?rlkey=t19wktth1uguutnmqkuej3jq7&dl=0
https://www.dropbox.com/scl/fi/k4yg4iwo1k0mjdinyahx0/CQJ13L_S23_L001.fna?rlkey=woawgupve273z3b7y7tx2xipi&dl=0
Thanks,
Phil
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